Gene Information

Name : ETAF_2260 (ETAF_2260)
Accession : YP_005699855.1
Strain : Edwardsiella tarda FL6-60
Genome accession: NC_017309
Putative virulence/resistance : Resistance
Product : putative AraC-family transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2576466 - 2576834 bp
Length : 369 bp
Strand : +
Note : -

DNA sequence : 
ATGACAACCCAGGGACAGCACCAGCTGTTGGTCGACGCATTAATTCAGTGGATAGAGCAGAATCTGGACAAGCGTATTCT
GATCGACGATATCGCCGAACGGGCGGGTTATTCCAAATGGTATCTGCAGCGCCTGTTTAAAGAGGTCACCGGCTACAGCC
TGGCCGCCTATGTGCGCAAACGCCGCCTGATCCGGGCGGCGGTGGAGCTGCAGCGCAGCAATAAGAAGATTATGGAGATC
ACGCTGCAGTACGGCTTTGATAGCCAGCAGACCTTCAGCCGGGCCTTTAAGCGCCGCTACGGCACCTCGCCCGGCAGCTA
TCGCCAGCAAACGGACGGCGAGCACCGCGTTGCGCTATCGCTCGCCTAA

Protein sequence : 
MTTQGQHQLLVDALIQWIEQNLDKRILIDDIAERAGYSKWYLQRLFKEVTGYSLAAYVRKRRLIRAAVELQRSNKKIMEI
TLQYGFDSQQTFSRAFKRRYGTSPGSYRQQTDGEHRVALSLA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 6e-26 53
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 6e-26 53
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 9e-25 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ETAF_2260 YP_005699855.1 putative AraC-family transcriptional regulator NC_010558.1.6276025. Protein 3e-26 53
ETAF_2260 YP_005699855.1 putative AraC-family transcriptional regulator CP001138.1.gene612.p Protein 3e-24 50
ETAF_2260 YP_005699855.1 putative AraC-family transcriptional regulator NC_002695.1.914293.p Protein 6e-25 47
ETAF_2260 YP_005699855.1 putative AraC-family transcriptional regulator CP001138.1.gene4488. Protein 3e-25 47
ETAF_2260 YP_005699855.1 putative AraC-family transcriptional regulator CP000034.1.gene4505. Protein 1e-24 47
ETAF_2260 YP_005699855.1 putative AraC-family transcriptional regulator BAC0371 Protein 6e-25 47
ETAF_2260 YP_005699855.1 putative AraC-family transcriptional regulator CP001918.1.gene327.p Protein 3e-24 44
ETAF_2260 YP_005699855.1 putative AraC-family transcriptional regulator CP000647.1.gene4499. Protein 4e-24 43
ETAF_2260 YP_005699855.1 putative AraC-family transcriptional regulator CP000647.1.gene1624. Protein 2e-21 41
ETAF_2260 YP_005699855.1 putative AraC-family transcriptional regulator CP001918.1.gene2033. Protein 4e-21 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ETAF_2260 YP_005699855.1 putative AraC-family transcriptional regulator VFG1038 Protein 2e-26 53
ETAF_2260 YP_005699855.1 putative AraC-family transcriptional regulator VFG0585 Protein 3e-25 47