Gene Information

Name : ETAF_2260 (ETAF_2260)
Accession : YP_005699855.1
Strain : Edwardsiella tarda FL6-60
Genome accession: NC_017309
Putative virulence/resistance : Resistance
Product : putative AraC-family transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2576466 - 2576834 bp
Length : 369 bp
Strand : +
Note : -

DNA sequence :

ATGACAACCCAGGGACAGCACCAGCTGTTGGTCGACGCATTAATTCAGTGGATAGAGCAGAATCTGGACAAGCGTATTCT
GATCGACGATATCGCCGAACGGGCGGGTTATTCCAAATGGTATCTGCAGCGCCTGTTTAAAGAGGTCACCGGCTACAGCC
TGGCCGCCTATGTGCGCAAACGCCGCCTGATCCGGGCGGCGGTGGAGCTGCAGCGCAGCAATAAGAAGATTATGGAGATC
ACGCTGCAGTACGGCTTTGATAGCCAGCAGACCTTCAGCCGGGCCTTTAAGCGCCGCTACGGCACCTCGCCCGGCAGCTA
TCGCCAGCAAACGGACGGCGAGCACCGCGTTGCGCTATCGCTCGCCTAA

Protein sequence :

MTTQGQHQLLVDALIQWIEQNLDKRILIDDIAERAGYSKWYLQRLFKEVTGYSLAAYVRKRRLIRAAVELQRSNKKIMEI
TLQYGFDSQQTFSRAFKRRYGTSPGSYRQQTDGEHRVALSLA

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
tetD	AAL08447.1	putative transcriptional regulator TetD	Not tested	SRL	Protein	6e-26	53
tetD	AEA34665.1	tetracycline resistance protein D	Not tested	Not named	Protein	6e-26	53
soxS	YP_219131.1	DNA-binding transcriptional regulator SoxS	Not tested	SPI-4	Protein	9e-25	47

• Homologs from CARD and BacMet (resistance genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
ETAF_2260	YP_005699855.1	putative AraC-family transcriptional regulator	NC_010558.1.6276025.	Protein	3e-26	53
ETAF_2260	YP_005699855.1	putative AraC-family transcriptional regulator	CP001138.1.gene612.p	Protein	3e-24	50
ETAF_2260	YP_005699855.1	putative AraC-family transcriptional regulator	CP001138.1.gene4488.	Protein	3e-25	47
ETAF_2260	YP_005699855.1	putative AraC-family transcriptional regulator	CP000034.1.gene4505.	Protein	1e-24	47
ETAF_2260	YP_005699855.1	putative AraC-family transcriptional regulator	BAC0371	Protein	6e-25	47
ETAF_2260	YP_005699855.1	putative AraC-family transcriptional regulator	NC_002695.1.914293.p	Protein	6e-25	47
ETAF_2260	YP_005699855.1	putative AraC-family transcriptional regulator	CP001918.1.gene327.p	Protein	3e-24	44
ETAF_2260	YP_005699855.1	putative AraC-family transcriptional regulator	CP000647.1.gene4499.	Protein	4e-24	43
ETAF_2260	YP_005699855.1	putative AraC-family transcriptional regulator	CP000647.1.gene1624.	Protein	2e-21	41
ETAF_2260	YP_005699855.1	putative AraC-family transcriptional regulator	CP001918.1.gene2033.	Protein	4e-21	41

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
ETAF_2260	YP_005699855.1	putative AraC-family transcriptional regulator	VFG1038	Protein	2e-26	53
ETAF_2260	YP_005699855.1	putative AraC-family transcriptional regulator	VFG0585	Protein	3e-25	47