Gene Information

Name : fimA (ETAF_2040)
Accession : YP_005699638.1
Strain : Edwardsiella tarda FL6-60
Genome accession: NC_017309
Putative virulence/resistance : Virulence
Product : P pilus assembly protein, pilin FimA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2325398 - 2325934 bp
Length : 537 bp
Strand : -
Note : -

DNA sequence : 
ATGAGTATAATGAAAACGTTGTTTTTTAAAGCAGCTGGAGCTATGACCATCGCACTGGTAACGTTTGGTAGCCAAGCTGC
GAGTGGGCAAGGGGTTGTGAATTTTAGTGGTACTGTAATTACCGCGCCATGTGGTATTGCTCCGGAATCTGCCGATCAAT
CGATTGATTTTGGTCAGATCTCGAAGAGCCATCTTGAGGCGGGTGGCATTTCCGTGAAGAAGAATATTGATATTAAACTG
GTTGGTTGCGATGCGACCGCGCTGGCTCAGACCGGTAGTGCCAAGGTGACATTTACTGGCGTTACTATTACCGGCGCGCC
TACCGAGTTAGGAACGACGGGCTCAACGGGTACGGCCATTGTTATTTCTAGTGAGGATGGCAGCTTAGTCTCATTTGGTA
ATGCTGGATCTGCACAAAAACTGAAGGTTGGCGATAATATTCTGCGTTATTCTGCATGGGTTAAAAGTGCTACGGGTGGT
ACATTGGCTGAGGGTGACTTTGCATCCGTGGCTAACTTTAATATTACCTACCAATAA

Protein sequence : 
MSIMKTLFFKAAGAMTIALVTFGSQAASGQGVVNFSGTVITAPCGIAPESADQSIDFGQISKSHLEAGGISVKKNIDIKL
VGCDATALAQTGSAKVTFTGVTITGAPTELGTTGSTGTAIVISSEDGSLVSFGNAGSAQKLKVGDNILRYSAWVKSATGG
TLAEGDFASVANFNITYQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pixA CAE85161.1 PixA protein Not tested PAI V 536 Protein 1e-41 57
papA AAZ04426.1 major fibrial protein Virulence PAI I APEC-O1 Protein 2e-35 53
papA YP_854256.1 major fibrial protein Virulence PAI I APEC-O1 Protein 2e-35 53
papA YP_002414017.1 P-fimbriae major subunit Not tested Not named Protein 5e-29 49
papA AAC61718.1 PapA Virulence PAI I CFT073 Protein 2e-17 49
papA AAL67417.1 PapA Virulence PAI II CFT073 Protein 6e-31 46
papA_2 NP_757036.1 PapA protein Virulence PAI II CFT073 Protein 1e-30 46
papA NP_755467.1 PapA protein Virulence PAI I CFT073 Protein 5e-26 45
prfA CAD42031.1 PrfA protein Virulence PAI II 536 Protein 7e-27 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fimA YP_005699638.1 P pilus assembly protein, pilin FimA VFG0893 Protein 3e-31 46
fimA YP_005699638.1 P pilus assembly protein, pilin FimA VFG0882 Protein 1e-26 45
fimA YP_005699638.1 P pilus assembly protein, pilin FimA VFG1550 Protein 3e-27 44