Gene Information

Name : papC (ETAF_2038)
Accession : YP_005699636.1
Strain : Edwardsiella tarda FL6-60
Genome accession: NC_017309
Putative virulence/resistance : Virulence
Product : P pilus assembly protein, porin PapC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2322081 - 2324627 bp
Length : 2547 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAAATAATAAGCAGTTCACGATTAGTAAAATTGCGGTATCCGTTTTGCTGTCACTTTGGGCAGGAAGCGCTTACGC
CGTGGATTTTAATACTGATGTATTAGATGCAGCAGATAAGAAAAATATTGATTTTTCAAGATTTTCTCAAGCCGGATACA
TCATGCCTGGGCAGTACCAGATGCAGGTTATGGTTAATGGACAAGCGATTAGTCCTTCATCACTGCCAGTCTCTTTTTTG
GATCAAACAGGTCCGGCTCCGCGAAATGGCGAACAAGCTTTACCGCAGGCCTGCCTGACACCACCGATGGTGACGTTGAT
AGGGTTGACCGCGTCTTCTCTGGAGAAAGTGACTTACTGGGATGATGGAAAGTGTGCAGATTTAACTGCGCTAAAAGGCG
TTACGCTTCGCCCGGATTTATCCAATGGTATTTTGGCGATTAATATGCCACAGGCTTGGATGGAGTACTCGGATGCCTCC
TGGCTGCCGCCATCGCGTTGGGATAACGGAATCCCTGGCTTATTGCTGGATTACAATATTAGCGCTACGGCCAATAGTCC
TCATCAGGGGCAACAATCTCAGTCAGTCAACTATAACGGTACCGTGGGGGCAAACTTAGCCTCATGGCGTATGCGCGCTG
ACTATCAGGGTGCAGTGAATCATATTTCAGGCAGCGGCCAGGGCAGCGATACCCAGTTTGATTGGAACCGCTTCTATATG
TATCGGGCGATTCCACGCTGGCGTGCTAAGTTGACATTGGGCGAGAATTATACCAATTCAGATATCTTCAACGCCTGGCG
CTATCTTGGTACTAGCCTCGAAAGCGATGATCGCATGCTACCGCCGAAACTGCGTGGATATGCGCCGCAGATCTCGGGCA
TCGCAGATACCAATGCCCGGGTAGTTGTATCCCAGCAAGGACGTATTTTATATGACTCTACGGTTCCTGCGGGTCCGTTT
ACTATCCAGGACTTAGACAGCTCTGTACGTGGGCGTTTAAATGTAGAGATTATTGAGCAGAATGGCCAGAAGAAAACGTT
TCAGGTTGATACGGCATCTGTACCTTATCTGACGCGTCCAGGTCAAATTCGCTACAAGTTATTCTCAGGTCGTTCTCGCA
ATGGTAATCATACGACGGAAGGCCCGCTGTTTATGGCAGGAGAGGCTTCATGGGGGATCAATAATACCTGGTCACTCTAT
GGTGGGGCAGTAGCTGCCGGGGAATATAATGCTTTGGCCCTGGGGGCTGGTCGTGATTTATACCAGCTGGGTACTCTCGC
GGTGGATGTTACTCAATCCGTGGCCAACCTGCCTGGGATTGGTACCAAGCAAGGGAAGTCTTGGCGGCTGAGTTACTCTA
AACGCTTTGATGAAGCTAATGCAGATATCACTTTCGCCGGTTATCGATTCTCCGAGCGAAATTATATGACGATGGAGCAA
TATCTCGATGCTCGCTATAGAAATAACTTGCGTGGTCGAGAGAAGGAGCTGTATACCGTTTCTTTGAATAAATCTTTTGA
TGATTGGAATACCTCTATTGGGGTGCAATACAGTTATCAAACATATTGGGATCAACGCTCGTCAGATAACTATTCAGTAT
CTTTGAATAATTACTTTGATGTCTTCGGGATTAAAAATATATCTGCAGGTATTTCTGCGTCACGCGCTAGATACTCTCGT
AACAGTGATATTCCTGGGGTGAATGATGCTTATAATGATTCTATTTTTATGCGCCTTTCTATTCCATGGAATAACGGTAC
TGTCAGCTATAGTGGTAACATGAGTGCTGGCCGATATACTCAGACCGCAGGTTATAGTGACTCCCTCAATGGGGGACTGG
ACAGTTACAACGTGAGTGCCGGTTTGAGTACTGGAGATAATCAGGGGAATCAGGGGCAGGTCAGTGGCTATTATAATCAC
AGCAGTCCGTTGGCTAATTTATCTGCCAATTTCTCAACGCTACAGCGTGGTTATACTTCCTTTGGGTTAAATGCTTCAGG
CGGTGCGACATTAACGACGAAAGGGATCGCGCTGCATGCCGGGGGCGTGAATGGTGGCACCCGACTATTAGTCGATACCG
ATGGTATTGGTGGGGTGCCTATAGACGGCGGACGCGTGTTTACCAACCGCTGGGGGATTGGGGTTGTTACGGATGTGAAT
AGCTATTACAGAAATACGACATCTGTTGACTTAAATAAATTGCCGGAGGATATGGAGGCAACTCGCTCAGTTGTTGAGTC
GGTATTGACTGAGGGGGCAATTGGTTATCGTAAGTTTGAAGTGCTAAAAGGTGCGCGTTTATTTGTTGTATTGCGTTTGG
CTGATAATACGGTGCCGCCTTTTGGTGCCAGTGTCACTAATGCACAAGGGCGTGAACTTGGCATGGTTGGCGATGCCGGC
TTGGCATGGCTAAGCGGCGTTGTCGCTGGAGAGAAAATTAATGTTGGATGGGGTGAACAGGTTCATTGTGTTAGTCAGGT
ACCTGAGAAAATTAAGTCTGAACAACAATTATTATTGCCTTGTCGGGTGCCGGGAGAAATAAAATAA

Protein sequence : 
MKNNKQFTISKIAVSVLLSLWAGSAYAVDFNTDVLDAADKKNIDFSRFSQAGYIMPGQYQMQVMVNGQAISPSSLPVSFL
DQTGPAPRNGEQALPQACLTPPMVTLIGLTASSLEKVTYWDDGKCADLTALKGVTLRPDLSNGILAINMPQAWMEYSDAS
WLPPSRWDNGIPGLLLDYNISATANSPHQGQQSQSVNYNGTVGANLASWRMRADYQGAVNHISGSGQGSDTQFDWNRFYM
YRAIPRWRAKLTLGENYTNSDIFNAWRYLGTSLESDDRMLPPKLRGYAPQISGIADTNARVVVSQQGRILYDSTVPAGPF
TIQDLDSSVRGRLNVEIIEQNGQKKTFQVDTASVPYLTRPGQIRYKLFSGRSRNGNHTTEGPLFMAGEASWGINNTWSLY
GGAVAAGEYNALALGAGRDLYQLGTLAVDVTQSVANLPGIGTKQGKSWRLSYSKRFDEANADITFAGYRFSERNYMTMEQ
YLDARYRNNLRGREKELYTVSLNKSFDDWNTSIGVQYSYQTYWDQRSSDNYSVSLNNYFDVFGIKNISAGISASRARYSR
NSDIPGVNDAYNDSIFMRLSIPWNNGTVSYSGNMSAGRYTQTAGYSDSLNGGLDSYNVSAGLSTGDNQGNQGQVSGYYNH
SSPLANLSANFSTLQRGYTSFGLNASGGATLTTKGIALHAGGVNGGTRLLVDTDGIGGVPIDGGRVFTNRWGIGVVTDVN
SYYRNTTSVDLNKLPEDMEATRSVVESVLTEGAIGYRKFEVLKGARLFVVLRLADNTVPPFGASVTNAQGRELGMVGDAG
LAWLSGVVAGEKINVGWGEQVHCVSQVPEKIKSEQQLLLPCRVPGEIK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pixC CAE85159.1 PixC protein Not tested PAI V 536 Protein 0.0 72
prfC CAD42029.1 PrfC protein Virulence PAI II 536 Protein 0.0 67
papC YP_854254.1 outer membrane usher protein PapC Virulence PAI I APEC-O1 Protein 0.0 67
papC AAZ04424.1 outer membrane usher protein Virulence PAI I APEC-O1 Protein 0.0 67
papC NP_755465.1 PapC protein Virulence PAI I CFT073 Protein 0.0 67
papC_2 NP_757034.1 PapC protein Virulence PAI II CFT073 Protein 0.0 67
papC YP_002414015.1 Outer membrane usher protein PapC Not tested Not named Protein 0.0 67

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
papC YP_005699636.1 P pilus assembly protein, porin PapC VFG1548 Protein 0.0 67
papC YP_005699636.1 P pilus assembly protein, porin PapC VFG0884 Protein 0.0 67
papC YP_005699636.1 P pilus assembly protein, porin PapC VFG0895 Protein 0.0 67