Gene Information

Name : fliP (ETAF_1944)
Accession : YP_005699542.1
Strain : Edwardsiella tarda FL6-60
Genome accession: NC_017309
Putative virulence/resistance : Virulence
Product : Flagellar biosynthesis protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2211384 - 2212124 bp
Length : 741 bp
Strand : +
Note : -

DNA sequence : 
ATGCGGCGTATTCTGCGTTACACCCTGCTGTCGGGGCTGCTGCTGTGCGCGCCCGCGGCACTGGCCCAGCTACCCGGCAT
TATCAGTCAACCGCTGGCACACGGCGGGCAGAGCTGGTCCCTGCCGGTCCAAACGCTGGTCTTCCTGACCTCGCTCAGCT
TCCTGCCGGCCGCGCTGCTGCTGATGACCAGCTTTACCCGGATCATCATCGTTCTCGGCCTGCTGCGCAACGCGCTGGGC
ACCCCCTCTGCGCCGCCGAATCAGGTGCTACTGGGGCTCGCGCTGTTTTTAACCTTTTTTATCATGTCGCCGGTGCTCGA
TAAGATCTACCAGGACGCCTATCAACCGTTCAGCGAGCAGAAAATCAGCATGGAGACCGCCCTAGATCGCGGCGCCAAAC
CGCTGCGGGCCTTTATGCTGCGTCAGACCCGTGAAACCGATCTGGCGCTGTTCTCCCGCCTGGCCAAACAGCCAGAGATG
CAGGGACCTGAGGATGTGCCGATGCGGATTCTGCTGCCGGCCTACGTCACCAGCGAACTGAAAACGGCGTTCCAGATCGG
CTTTACCGTCTTTATTCCGTTTTTGATCATCGACCTGGTCGTCGCCAGCGTATTGATGGCGCTGGGGATGATGATGGTGC
CCCCGGCCACCATCTCGCTGCCGTTTAAGCTGATGCTGTTTGTCCTGGTGGACGGCTGGCAGCTGCTGCTCGGCTCGCTG
GCGCAAAGCTTCTACACCTAA

Protein sequence : 
MRRILRYTLLSGLLLCAPAALAQLPGIISQPLAHGGQSWSLPVQTLVFLTSLSFLPAALLLMTSFTRIIIVLGLLRNALG
TPSAPPNQVLLGLALFLTFFIMSPVLDKIYQDAYQPFSEQKISMETALDRGAKPLRAFMLRQTRETDLALFSRLAKQPEM
QGPEDVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSL
AQSFYT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 9e-28 43
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 9e-28 43
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 9e-28 43
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 3e-30 43
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 6e-33 43
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 6e-33 43
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 4e-30 43
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 4e-30 43
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 3e-22 42
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 7e-29 42
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 3e-22 42
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 2e-31 42
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 3e-32 42
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 5e-23 42
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 4e-23 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 3e-32 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 4e-32 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 4e-32 42
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 2e-31 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 1e-30 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 1e-30 42
escR AAK26700.1 EscR Virulence LEE Protein 9e-31 42
escR AAL57527.1 EscR Virulence LEE Protein 9e-31 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 9e-31 42
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 5e-30 42
escR CAI43889.1 EscR protein Virulence LEE Protein 9e-31 42
escR AAC31528.1 L0049 Virulence LEE Protein 8e-31 42
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 1e-30 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 8e-31 42
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 1e-30 42
escR AAC38369.1 EscR Virulence LEE Protein 6e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_005699542.1 Flagellar biosynthesis protein FliP VFG2338 Protein 7e-92 88
fliP YP_005699542.1 Flagellar biosynthesis protein FliP VFG2494 Protein 5e-76 72
fliP YP_005699542.1 Flagellar biosynthesis protein FliP VFG1259 Protein 7e-64 60
fliP YP_005699542.1 Flagellar biosynthesis protein FliP VFG2016 Protein 6e-61 58
fliP YP_005699542.1 Flagellar biosynthesis protein FliP VFG0188 Protein 6e-32 42
fliP YP_005699542.1 Flagellar biosynthesis protein FliP VFG0394 Protein 4e-30 42
fliP YP_005699542.1 Flagellar biosynthesis protein FliP VFG0827 Protein 5e-31 42
fliP YP_005699542.1 Flagellar biosynthesis protein FliP VFG0044 Protein 7e-34 41
fliP YP_005699542.1 Flagellar biosynthesis protein FliP VFG0715 Protein 3e-30 41