Gene Information

Name : CpCIP5297_2081 (CpCIP5297_2081)
Accession : YP_005695595.1
Strain : Corynebacterium pseudotuberculosis CIP 52.97
Genome accession: NC_017307
Putative virulence/resistance : Virulence
Product : antimicrobial peptide ABC transporter ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2254069 - 2254752 bp
Length : 684 bp
Strand : -
Note : -

DNA sequence : 
ATGATTCCCGTTCTCTCTCTTGAAAAAGCCAGTGTTGTTTATCCCGATGGTTCGTCTACGGTTACGGCATTGGATGCCGT
TGACCTGGAAGTTCGTTCTGGCGAGTTGCTTGCGTTGGTAGGCGAATCCGGCTCCGGTAAGTCCACGTTGCTGTCTGTGG
CGGGGGCGCTCCAAACTCCGACTTCGGGCACGGTAATGGTTGCAGGGCAAGATATTCAAACCTTGGATGATGCCGGTCGT
GCCAAGTTGCGTCGTGAGAAGATCGGTTTTGTTTTCCAGCAGGCAAATCTTCTTGGTTCTCTCAATGCTCGGGAGCAGCT
TTTGGTCACGGATCACGTACGCGGTATACGCGGCTCAAAGCTACGGGCTCGTTATGATCGTGCTGATGAGTTGCTGGCGC
GCGTGGGCCTTGAAGGCAAGGAAAACCGTAAGATTGCGCAGCTTTCCGGTGGTCAGCGGCAACGTGTGAATATTGCACGT
GCCCTCATGGGGAATCCTGCGCTCTTGCTCGCCGATGAGCCTACCTCCGCATTGGACCGCCGCATGAGCGTGGAAATTGT
GTCTTTGCTTTCTGAGATCACTAAGGAGTTTGATGTGGCCACGGTGATGGTGACCCACGATTTGAGCCAGCTCTCTTATG
CCGACACCGTTGTGGAGCTTATCGACGGCGCCCGTAAAGACTAA

Protein sequence : 
MIPVLSLEKASVVYPDGSSTVTALDAVDLEVRSGELLALVGESGSGKSTLLSVAGALQTPTSGTVMVAGQDIQTLDDAGR
AKLRREKIGFVFQQANLLGSLNAREQLLVTDHVRGIRGSKLRARYDRADELLARVGLEGKENRKIAQLSGGQRQRVNIAR
ALMGNPALLLADEPTSALDRRMSVEIVSLLSEITKEFDVATVMVTHDLSQLSYADTVVELIDGARKD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-29 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 8e-29 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-29 44
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-28 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CpCIP5297_2081 YP_005695595.1 antimicrobial peptide ABC transporter ATPase NC_008702.1.4606598. Protein 2e-26 44
CpCIP5297_2081 YP_005695595.1 antimicrobial peptide ABC transporter ATPase CP001581.1.gene798.p Protein 2e-34 41
CpCIP5297_2081 YP_005695595.1 antimicrobial peptide ABC transporter ATPase NC_012469.1.7686878. Protein 2e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CpCIP5297_2081 YP_005695595.1 antimicrobial peptide ABC transporter ATPase VFG2059 Protein 6e-17 41