Gene Information

Name : ciuD (CpCIP5297_1007)
Accession : YP_005694568.1
Strain : Corynebacterium pseudotuberculosis CIP 52.97
Genome accession: NC_017307
Putative virulence/resistance : Virulence
Product : Iron ABC transporter ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1059356 - 1060069 bp
Length : 714 bp
Strand : +
Note : -

DNA sequence : 
GTGACTATTCCCGCTGGGAAAATTACTGCGTTGATTGGTCCGAATGGCTGTGGCAAATCAACTTTGCTCAAACTATTAGG
GAATCAATTAAAAGGTGAGCACGGGCAAGTTACATTAGGCGAGCGCGATCTTGACACCTTTTCTGCTCGTGATTTTGCCC
GTCAGGTTTCTTTTTTACCTCAGCAACCGGTTGTTCCTGAAGGCATGACAGTGCGGGAGCTTATCGCTTTTGGCCGTTAT
CCGTACACGGGTGCCTTTGCTTCTTTAAGCGATTCAGATCAGCGAGCTATCGACGAGGCCTCAAGGCTCACTAGCGTTGA
TACCTTCTTAGGGCAATCTGCGATGGAATTGTCCGGCGGCCAAAAACAACGCATGTGGATCGCGATGACTCTAGCGCAGG
AGACCTCTATTATGCTGCTGGATGAGCCAACCACGTTTTTAGATCCTGCACATCAGTTGGCTATTTTGGAATTAGTCAAG
TCCCTGAATGAGAAGGGAAGGACTATCGTGATGGTAGTCCATGATATGGCGCATGCTGCTAAGTTCTCTGATCATGTTGT
GGTGATGAAGAACGGAAAAATTCTTGAACAGGGGCCAACAGAAACCACTTTGAACCCAACACTGATTAAGAAAGCTTTTA
GTATTTCCACGCTTATGGTGACAGATCCAGAAACTGGGAGAAAGCTTCCCATTGCTTATGGAATTCACAAGTGA

Protein sequence : 
MTIPAGKITALIGPNGCGKSTLLKLLGNQLKGEHGQVTLGERDLDTFSARDFARQVSFLPQQPVVPEGMTVRELIAFGRY
PYTGAFASLSDSDQRAIDEASRLTSVDTFLGQSAMELSGGQKQRMWIAMTLAQETSIMLLDEPTTFLDPAHQLAILELVK
SLNEKGRTIVMVVHDMAHAAKFSDHVVVMKNGKILEQGPTETTLNPTLIKKAFSISTLMVTDPETGRKLPIAYGIHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 9e-111 99
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 9e-111 99
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 9e-111 99
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 9e-111 99
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-87 74
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 8e-46 44
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 8e-46 44
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 8e-46 44
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 8e-46 44
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-45 43
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 5e-48 42
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 2e-49 41
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 2e-49 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ciuD YP_005694568.1 Iron ABC transporter ATP-binding protein BAC0164 Protein 3e-48 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ciuD YP_005694568.1 Iron ABC transporter ATP-binding protein VFG1042 Protein 3e-48 42
ciuD YP_005694568.1 Iron ABC transporter ATP-binding protein VFG0925 Protein 2e-49 42