Gene Information

Name : Clo1313_0855 (Clo1313_0855)
Accession : YP_005687374.1
Strain : Clostridium thermocellum DSM 1313
Genome accession: NC_017304
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 990316 - 991035 bp
Length : 720 bp
Strand : +
Note : manually curated; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; KEGG: cce:Ccel_2106 two component transcriptional regulator, winged helix family; SMART: response regulator receiver

DNA sequence : 
GTGTATGACATGGCCAAAAAGTTAATTTATATAGTGGAAGACGAAAAGCATATTCAGGAATTGCTAAGGTTTAATCTTGA
GGAGAACGGCTATGAGGTGGAGTGCTTTGAAGACGGTGAGACCATGTTTGAGGTTGTGGAGAGGAAAAAGCCGGACCTCT
TCGTTCTGGATATAATGCTTCCGGGTGTGGACGGGTTTGAAATTTGCAAAAAAATCAAGGAGAATTATGACTTAAAGAAA
ATACCCATAATTATGCTTACTGCCAAAAATGATGAGCTTGACAGGGTTTTGGGGCTTGAGCTTGGCGCGGACGATTATAT
TTCAAAACCCTTTAGTGTCCGGGAATTTGTAGCAAGGGTAAAGGTTGCCTTCAGAAGGCAGGCGGATTCTTTTGAAAACA
GTCCTAAAAGAGTTAATGTCGGAAGAATAACCATAGATTTTGAAAGGCGCGAGGTTTACAAGGACAATCAGATAATTGAA
ATGACCTTTAAGGAGTTTGAGCTTTTAAAACTGTTGATTATGAACAGAGGCAAAGTTCTTTCGCGGGACATGCTGCTTCA
GAAAATCTGGGGATTTGACTTTTTTGGAGAAACAAGGACCGTGGATGTGCACATAAGATATTTGAGACAAAAAATTGAAG
ATGACGACAACAATCCCGTATATATTGAAACCGTAAGAGGTATAGGTTATCGGTTTAGTGATAAAGAGGTTCGGGAGTAA

Protein sequence : 
MYDMAKKLIYIVEDEKHIQELLRFNLEENGYEVECFEDGETMFEVVERKKPDLFVLDIMLPGVDGFEICKKIKENYDLKK
IPIIMLTAKNDELDRVLGLELGADDYISKPFSVREFVARVKVAFRRQADSFENSPKRVNVGRITIDFERREVYKDNQIIE
MTFKEFELLKLLIMNRGKVLSRDMLLQKIWGFDFFGETRTVDVHIRYLRQKIEDDDNNPVYIETVRGIGYRFSDKEVRE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 4e-36 41
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 1e-35 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clo1313_0855 YP_005687374.1 winged helix family two component transcriptional regulator NC_002952.2859905.p0 Protein 4e-50 50
Clo1313_0855 YP_005687374.1 winged helix family two component transcriptional regulator NC_013450.8614421.p0 Protein 4e-50 50
Clo1313_0855 YP_005687374.1 winged helix family two component transcriptional regulator NC_007793.3914279.p0 Protein 4e-50 50
Clo1313_0855 YP_005687374.1 winged helix family two component transcriptional regulator NC_007622.3794472.p0 Protein 4e-50 50
Clo1313_0855 YP_005687374.1 winged helix family two component transcriptional regulator NC_002745.1124361.p0 Protein 4e-50 50
Clo1313_0855 YP_005687374.1 winged helix family two component transcriptional regulator NC_009782.5559369.p0 Protein 4e-50 50
Clo1313_0855 YP_005687374.1 winged helix family two component transcriptional regulator NC_002951.3237708.p0 Protein 4e-50 50
Clo1313_0855 YP_005687374.1 winged helix family two component transcriptional regulator NC_003923.1003749.p0 Protein 3e-50 50
Clo1313_0855 YP_005687374.1 winged helix family two component transcriptional regulator NC_002758.1121668.p0 Protein 4e-50 50
Clo1313_0855 YP_005687374.1 winged helix family two component transcriptional regulator NC_009641.5332272.p0 Protein 4e-50 50
Clo1313_0855 YP_005687374.1 winged helix family two component transcriptional regulator HE999704.1.gene2815. Protein 6e-49 49
Clo1313_0855 YP_005687374.1 winged helix family two component transcriptional regulator AE016830.1.gene1681. Protein 3e-46 47
Clo1313_0855 YP_005687374.1 winged helix family two component transcriptional regulator NC_012469.1.7686381. Protein 5e-44 45
Clo1313_0855 YP_005687374.1 winged helix family two component transcriptional regulator NC_012469.1.7685629. Protein 2e-43 44
Clo1313_0855 YP_005687374.1 winged helix family two component transcriptional regulator AM180355.1.gene1830. Protein 8e-34 42
Clo1313_0855 YP_005687374.1 winged helix family two component transcriptional regulator NC_007793.3914065.p0 Protein 2e-33 41
Clo1313_0855 YP_005687374.1 winged helix family two component transcriptional regulator NC_002758.1121390.p0 Protein 2e-33 41
Clo1313_0855 YP_005687374.1 winged helix family two component transcriptional regulator NC_010079.5776364.p0 Protein 2e-33 41
Clo1313_0855 YP_005687374.1 winged helix family two component transcriptional regulator NC_002952.2859858.p0 Protein 2e-33 41
Clo1313_0855 YP_005687374.1 winged helix family two component transcriptional regulator NC_007622.3794948.p0 Protein 2e-33 41
Clo1313_0855 YP_005687374.1 winged helix family two component transcriptional regulator NC_003923.1003417.p0 Protein 2e-33 41
Clo1313_0855 YP_005687374.1 winged helix family two component transcriptional regulator NC_013450.8614146.p0 Protein 2e-33 41
Clo1313_0855 YP_005687374.1 winged helix family two component transcriptional regulator NC_002951.3238224.p0 Protein 2e-33 41
Clo1313_0855 YP_005687374.1 winged helix family two component transcriptional regulator NC_010400.5986590.p0 Protein 7e-34 41
Clo1313_0855 YP_005687374.1 winged helix family two component transcriptional regulator NC_011595.7057856.p0 Protein 1e-34 41
Clo1313_0855 YP_005687374.1 winged helix family two component transcriptional regulator NC_010410.6002989.p0 Protein 1e-34 41
Clo1313_0855 YP_005687374.1 winged helix family two component transcriptional regulator HE999704.1.gene1528. Protein 2e-35 41
Clo1313_0855 YP_005687374.1 winged helix family two component transcriptional regulator BAC0197 Protein 1e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clo1313_0855 YP_005687374.1 winged helix family two component transcriptional regulator VFG1563 Protein 2e-36 41
Clo1313_0855 YP_005687374.1 winged helix family two component transcriptional regulator VFG1702 Protein 4e-36 41