Gene Information

Name : Clo1313_2462 (Clo1313_2462)
Accession : YP_005688927.1
Strain : Clostridium thermocellum DSM 1313
Genome accession: NC_017304
Putative virulence/resistance : Virulence
Product : ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2874813 - 2877269 bp
Length : 2457 bp
Strand : -
Note : KEGG: cce:Ccel_0327 ATPase AAA-2 domain protein; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; UvrB/UvrC protein; Clp ATPase-like; SMART: AAA ATPase

DNA sequence :
ATGTACGGACGTTTTACCGAAAAAGCACAAAAAGCAATAAATATTTCTCAAAACATGGCAATAGAATTGGGACATAATTA
TGTCGGGACGGAGCACCTTCTTCTGGGATTGGTAAAAGAAGGAAGTGGAGTCGCCGCGCGGGTTTTGCAAAGCCAGGGCG
TTACTGAAGAGAAAGTTATAAGGGAAATTGAAGAACTCATCGGACGCGGCGAAATGATGGGCCAGCCTTTGGATTTCACT
CCGAGAACCAAAAGGGTTCTGGAGCTTAGCTATAGAGAGGCCCGCAGAATGGGTCACAACTATATCGGAACGGAGCACCT
TCTTTTAGGAATAATGAAAGAAGGGGAAAGCGTTGCCGTAAGAATTTTGAAGGACTTGGGAGTCGAGCATCAAAAGCTTG
TTCAGGAAATAATGAACATGCTCAGTGAAGAAGCACCCAATTCCACCGGTGTGCCAAAAGGCCATTCATCATATTCGAAC
ACACCGACCCTGAACCAGTTCGGAAGAGACTTGACGGAGATGGCAAGGGAGGCAAAATTTGACCCGGTAATAGGCCGTGA
CAAGGAAATTGAAAGAGTTATACAGATTTTGAGCAGAAGAACCAAAAACAACCCTTGTCTGATTGGTGAGCCCGGAGTCG
GTAAGACTGCGATTGCAGAAGGGCTTGCCCAGAAGATAGTTGAGGGAAATATTCCGGAAATATTGAAGGACAAAAGAGTT
GTGACTTTGGACTTGTCCTCAATGGTTGCCGGTGCAAAATACAGAGGTGAATTTGAAGAAAGGCTTAAAAAAGCTCTTGA
TGAAATCAGAAGGGCGGGCAATGTAATACTGTTCATAGATGAAATGCATACTATCATCGGAGCCGGAGCCGCTGAAGGTG
CAATCGACGCTTCCAATATATTAAAGCCTTCTTTGGCGCGGGGCGAAATTCAGGTTATCGGTGCCACCACCATTGATGAG
TACAGGAAGCACATTGAAAAGGACGCGGCTTTGGAGAGAAGATTCCAGCCGATACTTGTCGGAGAGCCGACAAAAGAAGA
AGCAATAGAAATATTGAGGGGTCTGAGAGACAAGTATGAAGCACATCATAGTGTGAAAATCACTGATGAGGCTTTGGTGG
CAGCCGTAAACATGTCGGACAGATACATTACGGACCGGTTCCTGCCCGATAAAGCCATCGACCTTATTGATGAGGCGGCA
TCAAGGGTAAGGCTGAAATCCTTTACCGCACCTCCTGATCTGAAACATCTCGAGGAAAAAGTGGAAAGACTCAGAAAAGA
AAAAGAAGATGCTATAGTATGCCAGGAATTTGAAAAGGCCGCCCGTATAAGAGATGAGGAGCAGAGGCTGAAAAATGAGC
TGGAAAAGGCAAAGGACAGTTGGCGGCAGAAAAATCAGACCACAACAAACGTAGTCAGTGAAGATGATATTGCAGTAATA
GTGTCCGACTGGACGGGTATTCCGGTAAAGAGACTTGCCGAGGAAGAATCGGAAAGACTTATGAAGATGGAAGACATACT
TCACAAAAGGGTAATAGGGCAGGATGAAGCGGTAAAGGCAATATCCAAAGCCATCAGAAGAGGAAGAGTGGGTCTTAAAG
ACCCGAAGAGGCCGGTGGGTTCATTCATTTTCCTGGGTCCTACAGGCGTTGGAAAAACTGAACTTAGCAAGGCTTTGGCA
GAAGCTCTCTTTGGTGAGGAAAACGCAATGATTAGAATAGACATGTCGGAGTACATGGAAAAGCACAGCGTTTCAAGACT
TGTAGGTTCACCGCCGGGATATGTAGGTTATGAAGAAGGAGGACAGCTTACCGAAAAAGTAAGAAGAAAGCCTTATTCGG
TAGTGTTGTTTGACGAAATTGAAAAGGCACATCCGGACATATTCAATATTCTGCTTCAAATTCTTGAAGACGGAAGACTG
ACGGATTCCCAGGGCAGGGTGGTGGACTTTAGAAACACGGTAATTATCATGACATCAAACATTGGTGCAAGGCTTATAAC
CGAGCCAAAGCAGCTGGGATTTGCTCCGGTCGCCCAGGATAAAAAGAAGAGCTATGAAGACATGAAGAACAACGTTATGA
ATGAGCTCAAAAAGAACTTCAGACCCGAGTTCTTAAACAGAATAGATGAAATAATCGTGTTCCATCCTCTTGAGGAAGAA
CACTTAAAGCAGATAGTAGGACTTATGATAGACAATCTTGCGGAAAGACTTAAACAGAATTCAATTGAAATTGAGGTGTC
GGACGAAGCAAAAGCTCTTCTTGCAAAGAAAGGATTTGATCCTGTGTACGGAGCAAGGCCGTTAAGAAGGGCTGTACAGA
GCATGGTTGAGGACAGACTTGCGGAGGAAATGCTGGAAGGCAGAGTAAAGTCGGGAGACAAGGTATTTGTCGACGTTAAA
GATGATGAACTGGTATTTGTCAAAGACAAAAGCGAGCTTGTTTCAAACAAGGGCTAA

Protein sequence :
MYGRFTEKAQKAINISQNMAIELGHNYVGTEHLLLGLVKEGSGVAARVLQSQGVTEEKVIREIEELIGRGEMMGQPLDFT
PRTKRVLELSYREARRMGHNYIGTEHLLLGIMKEGESVAVRILKDLGVEHQKLVQEIMNMLSEEAPNSTGVPKGHSSYSN
TPTLNQFGRDLTEMAREAKFDPVIGRDKEIERVIQILSRRTKNNPCLIGEPGVGKTAIAEGLAQKIVEGNIPEILKDKRV
VTLDLSSMVAGAKYRGEFEERLKKALDEIRRAGNVILFIDEMHTIIGAGAAEGAIDASNILKPSLARGEIQVIGATTIDE
YRKHIEKDAALERRFQPILVGEPTKEEAIEILRGLRDKYEAHHSVKITDEALVAAVNMSDRYITDRFLPDKAIDLIDEAA
SRVRLKSFTAPPDLKHLEEKVERLRKEKEDAIVCQEFEKAARIRDEEQRLKNELEKAKDSWRQKNQTTTNVVSEDDIAVI
VSDWTGIPVKRLAEEESERLMKMEDILHKRVIGQDEAVKAISKAIRRGRVGLKDPKRPVGSFIFLGPTGVGKTELSKALA
EALFGEENAMIRIDMSEYMEKHSVSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLFDEIEKAHPDIFNILLQILEDGRL
TDSQGRVVDFRNTVIIMTSNIGARLITEPKQLGFAPVAQDKKKSYEDMKNNVMNELKKNFRPEFLNRIDEIIVFHPLEEE
HLKQIVGLMIDNLAERLKQNSIEIEVSDEAKALLAKKGFDPVYGARPLRRAVQSMVEDRLAEEMLEGRVKSGDKVFVDVK
DDELVFVKDKSELVSNKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 58

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clo1313_2462 YP_005688927.1 ATPase VFG0079 Protein 0.0 64
Clo1313_2462 YP_005688927.1 ATPase VFG0080 Protein 5e-160 53