|
Name : Clo1313_0239 (Clo1313_0239) Accession : YP_005686784.1 Strain : Clostridium thermocellum DSM 1313 Genome accession: NC_017304 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : - COG ID : - EC number : - Position : 262134 - 263957 bp Length : 1824 bp Strand : - Note : PFAM: polysaccharide biosynthesis protein CapD; KEGG: cbf:CLI_3168 exopolysaccharide biosynthesis protein DNA sequence : ATGAAGAATTTGAACAACAGAATATGTCTGGCCGCCGATTGCTTGTTGGTAAACGTGGCTTTGTTTGCCGCACTTATGAT AAAGTTTGATGCAAACATCCCGGAAAATTTGCTTAAAATAATACCTTTTAATTTTCTTATTACAACTACGGTAAGCATAT TAGTATTTAATATATTCGGCATATATTCAATGCTATGGAACTATGCAAGTGTTGAAGAGCTTTTGAAAATATTTTGGGCA ACAATGACATCGGTAATTGTCCAACTTCTTTTGGCTGCATATTTTAATGTGATGTTCCCTGTTTCGGTTTACATTACATG CTGGATGATTACATTTTATTTTATAGGCGGAACAAGATTCATCGTCAGAATAACCAGGAGTATAAAAGCAAAAAAGAGAA AAAACACCCACAAAAAAAGAATAATGATTATCGGCGCCGGTGATACCGCTTCACTGTTGATTAAGGAAACAAAAAACAAT AAGCGCAGCATATATGAGCCGGTAGTTGCAATTGACGACGACCCTAAAAAGCACAACACCCAAATAAACGGTGTTCCCAT CATAGGAGGCAGGGATAAAATCATAGAAGCCGCAAAGGATATGTCTATAGAAGAAATAGTTTTAGCCATGCCGTCGGTTT CAAAAAAAGAAACGCTGGAAATTATAGACTTGTGCCAGAAGACAGGCTGCAAATTAAAAGTTTTGCCAAGCGTGTACGGC ATTGTAAACGGAGAAGTAAGCATCAAGGAAATAAGAGACGTCACTGTCGAGGACCTTTTGCCAAGAGATGAAATTTCCCT TTCCATAGAAGAGATATCCGGATATCTTAAAGGTGAAACCATTCTGGTTACCGGGGGAGGAGGTTCCATTGGCTCCGAGC TTTGCAGGCAAATAGCATCTTATGAGCCTAAAACCCTCCTGGTGTTTGATATATACGAAAATAATGCTTACGAGCTTCAA AATGAACTTGTGCAAAAATATAAAGGCAATCTGGATATCAAAGTGATAATAGGATCAATACGGGATAAAAAAAGACTGGA TTATGTGTTTTCCCAATACAAGCCGGGCATAGTGTTTCATGCAGCGGCTCACAAGCATGTCCCGCTTATGGAGTTCAATC CCCAGGAAGCCGTCAAGAACAATGTATTCGGCACATTAAATGTTGCCGAATGCGCCCATCAATACAACTGTAAAAAATTT GTGCTAATCTCGACCGACAAAGCGGTAAACCCAACAAGCATAATGGGAGCAACAAAAAGAATTGCCGAGCTTATAATACA ATATATGAACAGCATAAGCAAAACAAAATTTTGCGCCGTAAGATTCGGCAACGTACTGGACAGCAACGGAAGCGTCATCC CCCTTTTTAAAAAGCAGATTGAACAGGGAGGCCCCATAACAATAACCCATCCCGAAGTATCCCGGTATTTTATGACCATT CCCGAGGCGGTAAGCCTTGTCATTCAATCCGGAGCCATGATGGAAGGGGGAGAAATATTTATACTTGACATGGGCAAACC GGTTAAAATTACCGACCTTGCCAGAACGTTAATTTCTTTGTCGGGGTTAAAGCCCGGTGTTGACATAGATATTGAATATA TTGGATTAAGACCAGGCGAAAAGCTCCATGAAGAGCTGCTTATTTCAGAGGAAGGAGTCGGCGTAACAAAGAATGACAAA ATATTTATTGAAAAGAGCAGAATGATTGACTTTGACAAGTACATGCAGAGAATAAAAGAGTTTGAGCTTGATAATTTGGA TGACAGCGAAAAAGTGATAAATTTTATCAAAGAATTAGTTCCCACCTATAAGAAAAATTTGTAA Protein sequence : MKNLNNRICLAADCLLVNVALFAALMIKFDANIPENLLKIIPFNFLITTTVSILVFNIFGIYSMLWNYASVEELLKIFWA TMTSVIVQLLLAAYFNVMFPVSVYITCWMITFYFIGGTRFIVRITRSIKAKKRKNTHKKRIMIIGAGDTASLLIKETKNN KRSIYEPVVAIDDDPKKHNTQINGVPIIGGRDKIIEAAKDMSIEEIVLAMPSVSKKETLEIIDLCQKTGCKLKVLPSVYG IVNGEVSIKEIRDVTVEDLLPRDEISLSIEEISGYLKGETILVTGGGGSIGSELCRQIASYEPKTLLVFDIYENNAYELQ NELVQKYKGNLDIKVIIGSIRDKKRLDYVFSQYKPGIVFHAAAHKHVPLMEFNPQEAVKNNVFGTLNVAECAHQYNCKKF VLISTDKAVNPTSIMGATKRIAELIIQYMNSISKTKFCAVRFGNVLDSNGSVIPLFKKQIEQGGPITITHPEVSRYFMTI PEAVSLVIQSGAMMEGGEIFILDMGKPVKITDLARTLISLSGLKPGVDIDIEYIGLRPGEKLHEELLISEEGVGVTKNDK IFIEKSRMIDFDKYMQRIKEFELDNLDDSEKVINFIKELVPTYKKNL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 3e-99 | 47 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 1e-102 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Clo1313_0239 | YP_005686784.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 1e-96 | 44 |
| Clo1313_0239 | YP_005686784.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 5e-78 | 43 |
