Gene Information

Name : Clo1313_2127 (Clo1313_2127)
Accession : YP_005688619.1
Strain : Clostridium thermocellum DSM 1313
Genome accession: NC_017304
Putative virulence/resistance : Unknown
Product : riboflavin biosynthesis protein RibD
Function : -
COG functional category : -
COG ID : -
EC number : 1.1.1.193
Position : 2498987 - 2500093 bp
Length : 1107 bp
Strand : -
Note : TIGRFAM: riboflavin biosynthesis protein RibD; KEGG: cce:Ccel_2006 riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding

DNA sequence : 
GTGATTAAGTTGAGTGAAAAAGAGTTTTTCATGAGTAGAGCCATTAAACTAGCAAAACTTGGATGGGGAAAAACCAATCC
CAACCCTTTGGTGGGGGCGGTTGTTGTCAAGGATGGAAAAATAATTGCAGAAGGTTACCACAAGCAACTGGGAGGTCCTC
ATGCCGAAGTGGAGGCTTTTAACAACGCAAAGGAGGACGTTGCCGGCGGCACTTTGTATGTCAATTTGGAGCCATGTTCC
CATTACGGCAGGACGCCGCCCTGTGCTCAAAAAATTATTGATGTTGGGATAAAAAAAGTGGTTGCAGCCATAAAGGACCC
CAACCCGAAGGTTTCGGGCAGAGGTTTTGAAATGCTTAAAAACGCAGGAATTGAGGTTGAAGTCGGGGTACTTGAGGAAG
AGGCCATAAGACTCAACGAAATATTTATCACTTACATTGTAAAAAAGAAACCTTTTGTAATTTTAAAAACGGCAATGACA
TTGGACGGCAAGATAGCAACAGCTTCGGGAGACTCCAAATGGGTGACGGGGGAAAAAGCAAGAAATCATGTCCATGTGAT
AAGAGACAGGGTTGCGGCAGTAATGGTGGGAATTAATACTGTCCTGAAAGATAATCCATACCTTACCACAAGACTTCCCG
ACAAGGAAGGAAGCGATCCTGTGAGGATAGTTGTGGACAGCAAAGGCTCAATTCCCCTGGACTCAAATGTTATAAATTCC
AATTCAAAAGCCGGAGTTATACTTGCCACTACCTCCCGTATAGACAAGGAAAAGGAAAAAATGCTGATTGACAAAGGAGT
AAAAATCATTAAGGCGGACGGCAGTGACGGAAGAGTGGATTTAAAACTTCTGATGGATGAACTTTACAAACTTGAAATTG
ACAGTGTGCTGCTGGAAGGAGGAGGTACGCTGAACAGCTCTGCCATTTCCGCGGGAATTGTGGACAAAGTAATGTGTTTT
ATCTCTCCGAAGATAGTGGGGGGAGAAAATGCTCCCACCTCGGTTGAAGGAATCGGAGCATTAAGAATGTGTGAAGCCAT
AGGAGTAAAAAATATCAGTGTTGTAAAGTTTGGGGAAGACATACTTCTGGAAGGATATATAGAATGA

Protein sequence : 
MIKLSEKEFFMSRAIKLAKLGWGKTNPNPLVGAVVVKDGKIIAEGYHKQLGGPHAEVEAFNNAKEDVAGGTLYVNLEPCS
HYGRTPPCAQKIIDVGIKKVVAAIKDPNPKVSGRGFEMLKNAGIEVEVGVLEEEAIRLNEIFITYIVKKKPFVILKTAMT
LDGKIATASGDSKWVTGEKARNHVHVIRDRVAAVMVGINTVLKDNPYLTTRLPDKEGSDPVRIVVDSKGSIPLDSNVINS
NSKAGVILATTSRIDKEKEKMLIDKGVKIIKADGSDGRVDLKLLMDELYKLEIDSVLLEGGGTLNSSAISAGIVDKVMCF
ISPKIVGGENAPTSVEGIGALRMCEAIGVKNISVVKFGEDILLEGYIE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00289 YP_008207754.1 Pyrimidine deaminase Not tested AbaR25 Protein 1e-46 41
BJAB0868_00293 YP_008211619.1 Pyrimidine deaminase Not tested AbaR26 Protein 1e-46 41