Gene Information

Name : Clo1313_1423 (Clo1313_1423)
Accession : YP_005687936.1
Strain : Clostridium thermocellum DSM 1313
Genome accession: NC_017304
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1671537 - 1672214 bp
Length : 678 bp
Strand : -
Note : KEGG: clj:CLJU_c04440 putative two-component response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver

DNA sequence : 
ATGAAAATACTGCTTGTCGAAGATGAAGTACGCCTTTCCGAAGCACTTGTACATACTTTAAAAAAGAACAATTACATAGT
TGACGTCGCTTTTGACGGGATAACAGGCCAGCAGATGGCTGAGACAAATATGTACAACGTCATTATCCTTGACAGAATGT
TGCCCAAAAAAGACGGGCTTGACGTTTTAAGAGATCTCAGAAAACAGGGTGTCACAACTCCTGTTCTGATTCTAACCGCC
AAAGATTCGGTAAAAAACAGAGTTGAAGGTCTTGACAGCGGCGCCGACGATTATCTGACAAAACCTTTTTCCAAAAGCGA
ATTACTTGCAAGAATACGAGCTTTGGGAAGAAGACAAAGCGAAATATTTGTAAATGAAGAAATAAATATAGGAAACATGA
GCTTTAACTGCATGAAGGGAGAAATAAAAGTAAACGGGCAAACCATAAAACTTACGTCAAAAGAATCGCAAATTTTGGAA
ATACTCATTAAAAACAAAAACATAGTGGTTTCAAAAGAGCAACTCCTTGAGAAAGTATGGGGCTTTCAAACAGATATTGA
GCTTAACAATATTGAAGTATATCTCTCATATCTTAGAAAAAAACTTTCAAAACTGGACTGCGGAATTGTGATTGAGACAA
TAAGAGCAAGGGGCTATTGCCTTAAGGAGGCACTGTAA

Protein sequence : 
MKILLVEDEVRLSEALVHTLKKNNYIVDVAFDGITGQQMAETNMYNVIILDRMLPKKDGLDVLRDLRKQGVTTPVLILTA
KDSVKNRVEGLDSGADDYLTKPFSKSELLARIRALGRRQSEIFVNEEINIGNMSFNCMKGEIKVNGQTIKLTSKESQILE
ILIKNKNIVVSKEQLLEKVWGFQTDIELNNIEVYLSYLRKKLSKLDCGIVIETIRARGYCLKEAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-29 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 5e-29 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clo1313_1423 YP_005687936.1 winged helix family two component transcriptional regulator NC_003923.1003417.p0 Protein 1e-33 44
Clo1313_1423 YP_005687936.1 winged helix family two component transcriptional regulator NC_013450.8614146.p0 Protein 1e-33 44
Clo1313_1423 YP_005687936.1 winged helix family two component transcriptional regulator NC_002951.3238224.p0 Protein 1e-33 44
Clo1313_1423 YP_005687936.1 winged helix family two component transcriptional regulator NC_007793.3914065.p0 Protein 1e-33 44
Clo1313_1423 YP_005687936.1 winged helix family two component transcriptional regulator NC_002758.1121390.p0 Protein 1e-33 44
Clo1313_1423 YP_005687936.1 winged helix family two component transcriptional regulator NC_010079.5776364.p0 Protein 1e-33 44
Clo1313_1423 YP_005687936.1 winged helix family two component transcriptional regulator NC_002952.2859858.p0 Protein 1e-33 44
Clo1313_1423 YP_005687936.1 winged helix family two component transcriptional regulator NC_007622.3794948.p0 Protein 1e-33 44
Clo1313_1423 YP_005687936.1 winged helix family two component transcriptional regulator AE015929.1.gene1106. Protein 3e-27 42
Clo1313_1423 YP_005687936.1 winged helix family two component transcriptional regulator BAC0083 Protein 1e-30 42
Clo1313_1423 YP_005687936.1 winged helix family two component transcriptional regulator BAC0347 Protein 2e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clo1313_1423 YP_005687936.1 winged helix family two component transcriptional regulator VFG0596 Protein 2e-29 42
Clo1313_1423 YP_005687936.1 winged helix family two component transcriptional regulator VFG1390 Protein 6e-34 41