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Name : Clo1313_1334 (Clo1313_1334) Accession : YP_005687848.1 Strain : Clostridium thermocellum DSM 1313 Genome accession: NC_017304 Putative virulence/resistance : Unknown Product : DNA polymerase I Function : - COG functional category : - COG ID : - EC number : - Position : 1577578 - 1580262 bp Length : 2685 bp Strand : + Note : TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; KEGG: cce:Ccel_2075 DNA polymerase I; SMART: 5'-3' exonuclease; Helix-hairpin-helix d DNA sequence : ATGAGCAAGCAAAAATTGATGGCCATAGACGGAAACAGTATTCTTAACAGGGCTTTTTACGGGCTTCCCGAACTTCTGAC AACATCCGACGGGATATATACCAACGGAATTTATGTTTTTTTAAATATAATGCATAAATTTATTGAAGAGGAAAATCCCG AGTACATTTGCGTTGCGTTCGACCTTAAGGCTCCGACTTTCAGGCACAATAAATACGAAGGTTACAAGGCAAACAGGAAA GGAATGCCGGAAGAGCTCCGGGTTCAGGTTCCCCTGCTTAAGGAAGTTTTGGATGCAATGAATATAAAAAGACTTGAGAT GGAGGGGTTCGAGGCTGACGACATACTTGGTTCCGTTTCCTTGTGCGCCGAAAAAAAGGGTCTGGAAGTAATACTGGTTA CAGGGGACAGGGATGCTTTTCAATTGATCGGTCCTTCCACAAGGCTGAAACTTCCGCGGACGAGAGGCGGGAAAACAGAG GTTGAGGAATATGACTACAACAAGATTGTGGAGGTCTACGGAATCAAGCCGGAACAGTTTGTTGACGTCAAGGCTTTGGC GGGAGATACTTCCGACAATATTCCCGGTGTTCCGGGTATCGGCGAAAAGACGGCCCTGGCTCTCATAAAAGAATACAACA ATCTTGAAAACCTTTATAATTCATTGGACAGCATTAAAAAGAAAGGACTTAGGGAAAAGCTTGAAACTTTTAAGGAGCAG GCTTTTCTGAGCAGGGAGCTTGCCCTGATTGAAAGAAACATGCCGTCCCTTTGTGATATTGAAGAGCTGAAAAGAGTGGA GATTGACAGGGAAAAAACCTATGAGATATTTAAGAGGCTGGAATTTAGAAGCTTTATTGACAAGTTTGGATTGAACGATG TCCAAATCCAAAATACCGTGGAACTGAATGTGAAAATCGCAAAAAACGCCAGTGAACTTGAGAGTTTGAAAAACAATATT CTCAAGTCCAGAAAAGTTTGTATTTATCATTTGATTGACAAAACGGGCAGCTTTTCTCAAAAGCTTGCCGCCATTGCAAT TTCGCCCGTGGAGGATGAAGCATGGTATTTGGATTTTACCAATAATATTGATGAAGATGAGTTTTTCAGGCAGTTTAAGG ACGTTTTGGAGGATGGAAATATAAAGAAATACGGGCATGATTTGAAAAATTTTATAGTATATTTAAATAATCGGGGAATT GATTTTAACGGTTTGGCTTTTGACACAATGATTGGAGCTTATATAATAAACCCGTCAAAGGAGACCTATACGATATCCGA GCTGGCACAGGAGTATTTAAACTTGAGTGTAAAGGCGGTTGAGGAACTTGCGGGCAAGGGCAAAAGCTTTACTTTGTTTA AGGACATGCAGCCTGACGTTCTTTCAAAGACTGTTGGTGTTTATCCTCATGTTATAAGCAAAGTAAGCCGGAAAATTGAC AGCCTTCTTAAAGAAAACAACCAGGAGAGGCTTTATTATGACATTGAGCTTCCGCTGGTGCGGACCTTGGCGGATATGGA GTATTACGGATTCAAGGTTAATGTCGATGCTCTTGTGGAATTTTCGAAAGAGCTTCAGGAAAAGATAGATGTTGTAACAA AAGAAATATACACTTTGGCGGGAGAAGAGTTCAATATCAATTCTCCGAAACAGCTGGGAGTTATTTTGTTTGAGAAACTG GGTCTTCCCATTATTAAGAAAACAAAAACCGGATATTCAACCGATGCTGAAGTATTGGAAGAGCTTTCCGACAGGCATGA AATAGTGGAAAAAATACTGGAATACAGACAGCTTGTAAAGCTGAAATCCACTTATGCGGAAGGCCTTTTGGCGGTTATAA ATCCTTACACGGGAAAGATTCATTCAAGTTTCAACCAGACAGTGACGGCTACGGGAAGAATAAGCAGTACAGAGCCAAAT CTTCAGAATATACCGATAAAACTTGAAATGGGCAGGAAAATACGAAAAGTTTTTATACCTTCGGATGAAAACTATCTGCT TCTTGATGCGGACTATTCCCAGATAGAGCTTCGGGTTCTGGCCCACATAACCAATGACGAAAACATGATAAATGCGTTTT TAAACAACGAAGACATTCATACTTCCACGGCTGCATCGGTCTTTGGAATACCAAAAGAGGAAGTTACCCCTCTCATGAGG TCCAGAGCGAAAGCTGTCAATTTCGGTATTGTATACGGTATAGGGGACTTCAGTCTTGCAAAGGATCTTAAGATAAGCAG AAAGGAAGCCAGAGCATATATAGACGGTTATCTGGACAGATATCCAAATGTAAAGAAATATATGCATGATATTGTGGAAG AGGGAAAAGAAAAAGGTTTTGTAACCACCATGTTCATGAGAAGAAGGTACCTTCCTGAGCTTAAATCGCGCAACTTCAAC ATACGGTCTTTTGGAGAACGGGTTGCGATGAACACCCCGATACAGGGAAGTGCCGCGGATATAATCAAGATTGCCATGGT AAAGGTGCATGGAGAGCTTAAAAAAAGAAAGCTTAAATCCAGGCTGATACTTCAGGTTCACGATGAACTTATTGTAGAGA CGTTCAAGGATGAAAAAGAAGAGGTGGAAAAGATTTTACTTGAAGGCATGCAAAATGCCGTAAGTCTGAAAGTGCCGCTG GTTGTGGAGATTAAATCGGGCAGCAACTGGTATGAGACAAAGTAA Protein sequence : MSKQKLMAIDGNSILNRAFYGLPELLTTSDGIYTNGIYVFLNIMHKFIEEENPEYICVAFDLKAPTFRHNKYEGYKANRK GMPEELRVQVPLLKEVLDAMNIKRLEMEGFEADDILGSVSLCAEKKGLEVILVTGDRDAFQLIGPSTRLKLPRTRGGKTE VEEYDYNKIVEVYGIKPEQFVDVKALAGDTSDNIPGVPGIGEKTALALIKEYNNLENLYNSLDSIKKKGLREKLETFKEQ AFLSRELALIERNMPSLCDIEELKRVEIDREKTYEIFKRLEFRSFIDKFGLNDVQIQNTVELNVKIAKNASELESLKNNI LKSRKVCIYHLIDKTGSFSQKLAAIAISPVEDEAWYLDFTNNIDEDEFFRQFKDVLEDGNIKKYGHDLKNFIVYLNNRGI DFNGLAFDTMIGAYIINPSKETYTISELAQEYLNLSVKAVEELAGKGKSFTLFKDMQPDVLSKTVGVYPHVISKVSRKID SLLKENNQERLYYDIELPLVRTLADMEYYGFKVNVDALVEFSKELQEKIDVVTKEIYTLAGEEFNINSPKQLGVILFEKL GLPIIKKTKTGYSTDAEVLEELSDRHEIVEKILEYRQLVKLKSTYAEGLLAVINPYTGKIHSSFNQTVTATGRISSTEPN LQNIPIKLEMGRKIRKVFIPSDENYLLLDADYSQIELRVLAHITNDENMINAFLNNEDIHTSTAASVFGIPKEEVTPLMR SRAKAVNFGIVYGIGDFSLAKDLKISRKEARAYIDGYLDRYPNVKKYMHDIVEEGKEKGFVTTMFMRRRYLPELKSRNFN IRSFGERVAMNTPIQGSAADIIKIAMVKVHGELKKRKLKSRLILQVHDELIVETFKDEKEEVEKILLEGMQNAVSLKVPL VVEIKSGSNWYETK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| polA | YP_281523.1 | DNA polymerase I | Not tested | Not named | Protein | 8e-142 | 41 |
