Gene Information

Name : Clo1313_1309 (Clo1313_1309)
Accession : YP_005687823.1
Strain : Clostridium thermocellum DSM 1313
Genome accession: NC_017304
Putative virulence/resistance : Virulence
Product : lipoprotein signal peptidase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1555397 - 1555852 bp
Length : 456 bp
Strand : +
Note : KEGG: cce:Ccel_0609 lipoprotein signal peptidase; TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II

DNA sequence : 
ATGATTTTCATAGTATTAATTGCCGCTTTTGTGGCTGCTGACCAGTTGACAAAGTATATTGTTGTCAGGAATATTGAATT
TGGAGACAAAATAAGTGTAATTGACAACTTTTTTTATCTGACTCACTGGAGAAATACCGGTGCTGCCTGGGGTATCATGC
AGAACGGGAGATATATACTTGTTCCCGTTACGGTAGTGCTTTCAATTTTAATTGTATACTTTATTTTTAAAAACAGCAAC
AAGTTTTACAGATTCTCACTTAGCATGATCCTTGGAGGAGCATTGGGAAATCTTATTGACAGGGTATTTAGAACCGACGG
GGTTGTGGATTTTCTTGATTTTCAGTTTGGAAATTACCATTTTCCCGTATTTAATGTTGCAGATACTTTTGTAGTGGTTG
GAACTCTGCTTTTAGCCTATTATACTTTGTTTATATACAAGGAAGACAAGAAATAA

Protein sequence : 
MIFIVLIAAFVAADQLTKYIVVRNIEFGDKISVIDNFFYLTHWRNTGAAWGIMQNGRYILVPVTVVLSILIVYFIFKNSN
KFYRFSLSMILGGALGNLIDRVFRTDGVVDFLDFQFGNYHFPVFNVADTFVVVGTLLLAYYTLFIYKEDKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lspA ADI24143.1 lipoprotein signal peptidase Not tested AbaR1 Protein 5e-12 44
lspA CAJ77023.1 lipoprotein signal peptidase Not tested AbaR1 Protein 5e-12 44
lspA ACS32043.1 lipoprotein signal peptidase Not tested AbaR5 Protein 8e-12 44
SE0072 NP_763627.1 lipoprotein signal peptidase Not tested SCCpbp4 Protein 1e-06 41
ACICU_00236 YP_001844895.1 lipoprotein signal peptidase Not tested AbaR20 Protein 1e-12 41
lspA ACN81031.1 lipoprotein signal peptidase Not tested AbaR5 Protein 1e-12 41
lspA CAJ77096.1 Lipoprotein signal poeptidase Not tested AbaR1 Protein 8e-13 41
lspA ADZ05771.1 lipoprotein signal peptidase Not tested AbaR11 Protein 8e-13 41
lspA AGK36655.1 lipoprotein signal peptidase Not tested AbaR26 Protein 8e-13 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clo1313_1309 YP_005687823.1 lipoprotein signal peptidase VFG2161 Protein 1e-17 44