Gene Information

Name : H04402_02743 (H04402_02743)
Accession : YP_005679281.1
Strain : Clostridium botulinum H04402 065
Genome accession: NC_017299
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2845383 - 2846159 bp
Length : 777 bp
Strand : -
Note : -

DNA sequence : 
ATGAAGAAAAGAAATAACAGAATGATGTTTATGGTTTTACTAGCTTTAGGTATAGTGTTTTTTTATTCCATGAAAGCCTA
TGCAGCACCACAAAATACCATGCCTATACCCAAAATAAATATTTCTGTAGATAATGCTAATAATCCCACGGAGTATGTAG
ATAATATAAAGCTGTTAATAATGTTAACTGTATTAACATTACTGCCATCTTTCATAGTAATGATGACAAGCTTTGTAAGA
ACAATTGTGGTATTTGGATTTTTAAGAAATGCTATGGGAACACAACAATCTCCACCTAATCAGGTAATGATTGGTCTAGC
ACTTTTTTTAACTTTATTTATAATGCAACCAGTATATAGCGAAATAAATACTAAGGCTATACAACCCTATATGAAAAATA
AAATTACTCAAGAACAGGCAGTAGAAATAGGGGCCAAGCCTCTTAGACAATTTATGCTAAAGCAAACAAGACAAAAGGAT
TTAAAATTGTTTGTGGATCTCGCAAAGCCTAATTTTAAAGTAACAAAGGATAATGCACCTTTATATATAGTTGTACCTGC
CTTTATAATAAGTGAGCTTAAAACAGCTTTTCAAATAGGATTTTTATTATTTATTCCATTTTTAATTATAGATTTAGTAG
TAGCTAGTGTACTTATGTCTATGGGTATGTTTATGTTACCACCGGTCATGATATCTCTGCCCTTTAAGCTTTTGTTGTTT
GTAATGGTAGACGGATGGTACCTTCTGGTGAAATCTTTAGTAATGAGTTTTGGTTAG

Protein sequence : 
MKKRNNRMMFMVLLALGIVFFYSMKAYAAPQNTMPIPKINISVDNANNPTEYVDNIKLLIMLTVLTLLPSFIVMMTSFVR
TIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKAIQPYMKNKITQEQAVEIGAKPLRQFMLKQTRQKD
LKLFVDLAKPNFKVTKDNAPLYIVVPAFIISELKTAFQIGFLLFIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLLLF
VMVDGWYLLVKSLVMSFG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 6e-25 43
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 3e-22 42
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 6e-23 42
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 5e-18 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 5e-18 42
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 5e-18 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 6e-22 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 4e-22 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 6e-22 42
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 8e-24 42
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 7e-22 42
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 7e-22 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 1e-22 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 1e-22 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 4e-23 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 4e-23 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 8e-23 42
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 4e-22 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 2e-21 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 2e-21 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
H04402_02743 YP_005679281.1 flagellar biosynthesis protein FliP VFG2338 Protein 2e-40 60
H04402_02743 YP_005679281.1 flagellar biosynthesis protein FliP VFG2494 Protein 6e-41 53
H04402_02743 YP_005679281.1 flagellar biosynthesis protein FliP VFG2016 Protein 8e-41 52
H04402_02743 YP_005679281.1 flagellar biosynthesis protein FliP VFG1259 Protein 2e-47 52
H04402_02743 YP_005679281.1 flagellar biosynthesis protein FliP VFG0394 Protein 5e-26 45
H04402_02743 YP_005679281.1 flagellar biosynthesis protein FliP VFG0519 Protein 2e-22 42
H04402_02743 YP_005679281.1 flagellar biosynthesis protein FliP VFG0188 Protein 7e-27 42
H04402_02743 YP_005679281.1 flagellar biosynthesis protein FliP VFG0044 Protein 2e-23 41