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Name : lysS (CBF_3702) Accession : YP_005676428.1 Strain : Clostridium botulinum 230613 Genome accession: NC_017297 Putative virulence/resistance : Virulence Product : lysine--tRNA ligase Function : - COG functional category : - COG ID : - EC number : 6.1.1.6 Position : 3862142 - 3863656 bp Length : 1515 bp Strand : - Note : identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499 DNA sequence : GTGTCAAAGGAAGATAATGTGATAAACAGTTTTGAAGAACAAGCAAATGAATTAATGAAGGAAAGATTCCAAAAGTTAAA GGAACTTCAATCTAATGGCAAAGATCCATTTGATGTTTATAAGGTTGAAAGAACCCATACTTCAAAAGAAGTAAAGGATA ATTATGAAGATCTAGAAGGAAAAACTGTTACAGTGGCAGGAAGACTTATGTCAAAAAGAGTTCATGGAAAAGCTGGATTT TCAGATATACATGATAGATATGGAAAAATTCAATTATACATAAAGATAAATGATGTAGGGGAAGAAAAACTTAAAGAATA TAAGACTTTTGATATAGGTGATATAATAAGTGTAACAGGAACAGTTTTTAAAACAAAAACAGGAGAAACATCAATACACA TAACAGATTTTCAATTAGTTTGTAAATCTTTAAGACCATTACCAGAAAAGTGGCATGGATTAAAAGATCCAGATTTAAGA TATAGACAAAGATATGTAGATTTAATAATAAACCAAGATGTTAGAGATACTTTTATAAAAAGAACAGCTATAATTAAGTC TATGAGAGAATTCTTGGATAATAGAGGATTTTTAGAAGTAGAAACACCAATATTATCACCAATAGCAGGCGGAGCAGCAG CTAAGCCTTTTATTACTCATCATAATGCTTTAGATATAGATATGTATCTTAGAATAGCTACTGAATTATATCTAAAAAGA TTAATAGTAGGTGGCTTTGAAAAAGTATATGAGATTGGTAAAAACTTTAGAAATGAAGGAATAGATATAAGACATAATCC AGAATTTACAGCTATAGAATTATATGAAGCTTATGCGGATTATAATGATATGATGGAAATCACAGAAAATATGATAGCTT ATATATGCGAAAAAGTTCTAGGTACAACTAAAGTTGAATATGAAGGAGCAGAAATAGATTTTACACCACCATGGAGAAGA TTAACTATGGTAGATGCTGTAAAGGAATATGCAGGAGTAGATTTTAACATTATAAAAAATGACATCGAGGCAAGAACAAT CGCAAAAGAAAAACATATAGAATTTAAAAAAGAATTAAAGGATTGCACAAAAGGTGATGTACTTATAGGATTATTTGAGG AATTCTGTGAAGACAAGTTAATGCAGCCTACTTTTATTTGTGATTATCCAGTAGAAAATTCACCTCTTACAAAGAAGAAA AGAGGAAATGAAGCATTTACTGAAAGATTTGAAGGCTTTGTATTTGGAAGAGAAGTATGTAACGCATATTCTGAATTAAA TGATTCTATAGTTCAAAAAGAAAGATTCATGCAACAATTAAAGGAAAGAGAATTAGGTGATGATGAAGCTTATATGATGG ATGACGACTTTATAACTTCATTAGAAGTAGGTATGCCACCGACAGGAGGATTAGGAATAGGTATTGATAGATTAATAATG TTCTTAACAGATACACATTCTATAAGAGATGTTATACTATTCCCAACTATGAAACCGCAACCTAATAATCAATAA Protein sequence : MSKEDNVINSFEEQANELMKERFQKLKELQSNGKDPFDVYKVERTHTSKEVKDNYEDLEGKTVTVAGRLMSKRVHGKAGF SDIHDRYGKIQLYIKINDVGEEKLKEYKTFDIGDIISVTGTVFKTKTGETSIHITDFQLVCKSLRPLPEKWHGLKDPDLR YRQRYVDLIINQDVRDTFIKRTAIIKSMREFLDNRGFLEVETPILSPIAGGAAAKPFITHHNALDIDMYLRIATELYLKR LIVGGFEKVYEIGKNFRNEGIDIRHNPEFTAIELYEAYADYNDMMEITENMIAYICEKVLGTTKVEYEGAEIDFTPPWRR LTMVDAVKEYAGVDFNIIKNDIEARTIAKEKHIEFKKELKDCTKGDVLIGLFEEFCEDKLMQPTFICDYPVENSPLTKKK RGNEAFTERFEGFVFGREVCNAYSELNDSIVQKERFMQQLKERELGDDEAYMMDDDFITSLEVGMPPTGGLGIGIDRLIM FLTDTHSIRDVILFPTMKPQPNNQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 2e-108 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_005676428.1 | lysine--tRNA ligase | VFG1668 | Protein | 1e-108 | 48 |
