Gene Information

Name : fliP (CBF_2708)
Accession : YP_005675545.1
Strain : Clostridium botulinum 230613
Genome accession: NC_017297
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2849634 - 2850410 bp
Length : 777 bp
Strand : -
Note : identified by match to protein family HMM PF00813; match to protein family HMM TIGR01103

DNA sequence : 
ATGAAGAAAAGAAATAACAGAATGATGTTTATGGTTTTACTAGCTTTAGGTATAGTGTTTTTTTATTCCATGAAAGCCTA
TGCAGCACCACAAAATACCATGCCTATACCCAAAATAAATATTTCTGTAGATAATGCTAATAATCCCACGGAGTATGTAG
ATAATATAAAGCTGTTAATAATGTTAACTGTATTAACATTACTGCCATCTTTTATAGTAATGATGACAAGCTTTGTAAGA
ACAATTGTGGTATTTGGATTTTTAAGAAATGCTATGGGAACACAACAATCTCCACCTAATCAGGTAATGATTGGTCTTGC
GCTTTTTTTAACTTTATTTATAATGTACCCGGTATATAGCGAAGTAAATACTAAGGCTATACAGCCCTATATGAAAAATA
AAATTACTCAAGAACAGGCAGTAGAAATAGGGGCCAAGCCTCTTAGACAATTTATGCTAAAGCAAACAAGGCAAAAGGAT
TTAAAATTGTTTGTGGATCTCGCAAAGCCTAATTTTAAAGTAACAAAGGATAATGCACCTTTATATATAGTGGTACCTGC
CTTTATAATAAGTGAGCTTAAAACAGCTTTTCAAATAGGATTTTTATTATTTATTCCATTTTTAATTATAGATTTAGTAG
TAGCTAGTGTACTTATGTCTATGGGTATGTTTATGTTACCACCGGTCATGATATCTCTACCCTTTAAGCTTTTGTTGTTT
GTAATGGTAGACGGATGGTACCTTCTGGTGAAATCTTTAGTAATGAGTTTTGGTTAG

Protein sequence : 
MKKRNNRMMFMVLLALGIVFFYSMKAYAAPQNTMPIPKINISVDNANNPTEYVDNIKLLIMLTVLTLLPSFIVMMTSFVR
TIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMYPVYSEVNTKAIQPYMKNKITQEQAVEIGAKPLRQFMLKQTRQKD
LKLFVDLAKPNFKVTKDNAPLYIVVPAFIISELKTAFQIGFLLFIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLLLF
VMVDGWYLLVKSLVMSFG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 9e-22 43
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-22 43
lscR AAO18040.1 LscR Virulence TTSS locus Protein 3e-24 43
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-23 43
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 3e-22 43
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 1e-22 43
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 1e-22 43
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-22 43
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 3e-22 43
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 1e-21 43
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 1e-17 42
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 1e-17 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 1e-17 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 1e-21 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 6e-21 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 6e-21 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 1e-21 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 1e-21 42
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-21 41
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-21 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_005675545.1 flagellar biosynthetic protein FliP VFG2338 Protein 3e-40 60
fliP YP_005675545.1 flagellar biosynthetic protein FliP VFG2494 Protein 9e-41 53
fliP YP_005675545.1 flagellar biosynthetic protein FliP VFG2016 Protein 2e-40 52
fliP YP_005675545.1 flagellar biosynthetic protein FliP VFG1259 Protein 6e-47 52
fliP YP_005675545.1 flagellar biosynthetic protein FliP VFG0394 Protein 2e-25 45
fliP YP_005675545.1 flagellar biosynthetic protein FliP VFG0519 Protein 6e-22 42
fliP YP_005675545.1 flagellar biosynthetic protein FliP VFG0188 Protein 3e-26 42