|
Name : CBF_1956 (CBF_1956) Accession : YP_005674845.1 Strain : Clostridium botulinum 230613 Genome accession: NC_017297 Putative virulence/resistance : Virulence Product : general secretion pathway protein E Function : - COG functional category : - COG ID : - EC number : - Position : 2086580 - 2088109 bp Length : 1530 bp Strand : - Note : identified by match to protein family HMM PF00437; match to protein family HMM PF05157 DNA sequence : ATGAGCTTTTCTATGAATTATTTAGATTTAAAGGAGACTGTACAAAACTCTGAAGAATTAAGAGGTGGAAAGCAGTGTGA AAATATAGACTTTAGTACTTTAAAAATAGAATCTTTTCTGCTAAAATTGCTGCCAGAGCATATTTGTAGAAAATATAATA TATTACCCTTAAAAATAATTGGCGAACAATTGTATATAGCATCTTCAAATTACTTAAAAGAAGATGCTTTATATAAAATA TCCTTTATTACGGGTAAAAATATAAAAATAGTTCTTTGTAATAAAGAAGATATTTTAGGGGCTATAAAGAGATTTTATAC AAACTATGAAGGAAAATATAATGTTAAAGGAATAAAGGAAGAAAAAACTATATCCTATGAAGAAAATAAAGAAAAAAATT TAGAAGGCCCTATAATAAAGTTAACAGATTCTATAATAGAAGAGGCTGTTTGGAGAAAGGCTAGTGATATACATATAGAA CCCTTCAAAGATTTTGCTTTAATAAGATTTAGAATAGATGGCATTTTAATAGAATTCAAAAAAATATCAAAAAAAATTTA CACTTCTATTTGCACTCGTATAAAAATAATAAGTTATATGAACATAGCAGAAAAAAATATTCCTCAGGATGGTAAAATAC AAAACAATTATAGAGAAAATAATGATTTTAGAGTATCTACATTGCCCACAGTATATGGCGAAAAACTAGTGATAAGAATA CTATATAAAAATGAAAAAATAGCAGATTTAAAATCTTTAGGATTTTTAAAAGAAGATAGAAAAAATATAGAAAAAATGCT TAAAAAGCCTAATGGATTAATTTTAATTACAGGGCCTACAGGCAGTGGTAAATCTACAACTTTATATTCTATGCTTCAAT ATATAAACAATAAAGAAAAAAACATAATAACCATTGAAGAGCCAGTAGAATATACTATAAATGGTATAAACCAAGTTAAT GTAGACTATAAAAGGGAACTTACTTTTCTAAAAGGTTTAAAATCTATATTAAGGCAGGATCCCGATATAATAATGGTAGG AGAAATTAGAGATGAAGAAACAGCTAAAGTAGCGGTAAGAGCTTCTATAACAGGACATTTAGTTTTATCTACTCTACATA CTAATGGAGCCTTAGAATCTATAATAAGGCTTTTGGATATGAAAATAGAACCCTATATTCTAAGTGATGCCTTAAGAGGA ATTATTTCACAAAGACTGGTGAGAAAGATATGTCCTTATTGCAAAGAAGCATATATACCTTCAACGGAGGAAAAGAACTT TCTAAATTTAAAAGAAGAGTTTCTACTATATAAAGGCAAAGGATGTCATAAATGCAATAATACAGGTTATATAGGTAGAA GCGTTCTTTATGAATATATAAATATTGATAAAGAAAAAAAGGACTTAATTAAAAACATAGTAAAAAACAATAATGAAGAA ATTTTTTTAGAAAATAGCTTAAAAGAAAATGTTAATAAAGCATTAATACAAGGAAGGACATCTTTTAGTGAAATCCAAAG AATAATATAA Protein sequence : MSFSMNYLDLKETVQNSEELRGGKQCENIDFSTLKIESFLLKLLPEHICRKYNILPLKIIGEQLYIASSNYLKEDALYKI SFITGKNIKIVLCNKEDILGAIKRFYTNYEGKYNVKGIKEEKTISYEENKEKNLEGPIIKLTDSIIEEAVWRKASDIHIE PFKDFALIRFRIDGILIEFKKISKKIYTSICTRIKIISYMNIAEKNIPQDGKIQNNYRENNDFRVSTLPTVYGEKLVIRI LYKNEKIADLKSLGFLKEDRKNIEKMLKKPNGLILITGPTGSGKSTTLYSMLQYINNKEKNIITIEEPVEYTINGINQVN VDYKRELTFLKGLKSILRQDPDIIMVGEIRDEETAKVAVRASITGHLVLSTLHTNGALESIIRLLDMKIEPYILSDALRG IISQRLVRKICPYCKEAYIPSTEEKNFLNLKEEFLLYKGKGCHKCNNTGYIGRSVLYEYINIDKEKKDLIKNIVKNNNEE IFLENSLKENVNKALIQGRTSFSEIQRII |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-74 | 45 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-74 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CBF_1956 | YP_005674845.1 | general secretion pathway protein E | VFG1876 | Protein | 3e-75 | 46 |
| CBF_1956 | YP_005674845.1 | general secretion pathway protein E | VFG2048 | Protein | 4e-75 | 45 |
| CBF_1956 | YP_005674845.1 | general secretion pathway protein E | VFG0182 | Protein | 1e-76 | 41 |
