Gene Information

Name : CPK_ORF01103 (CPK_ORF01103)
Accession : YP_005661755.1
Strain : Chlamydophila pneumoniae LPCoLN
Genome accession: NC_017285
Putative virulence/resistance : Virulence
Product : sigma-54 dependent DNA-binding response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 164233 - 165393 bp
Length : 1161 bp
Strand : -
Note : -

DNA sequence : 
ATGGCGATTAAAAATATACTCGTTGTTGATGACGAGCCCCTACTCCGAGATTTCCTCTCGGAACTTCTTACCTCACAGGG
ATTCATCCCAGACACTGCTGAAAACTTAAGAAATGCTCTCCAAATGATCCGAACTCGAGACTATGACCTTGTCATCTCAG
ACATGAGTATGCCTGACGGCTCTGGTCTTGATTTAATCAAAATTATAAAGCAAAGCTCCCCCCACACGCCCGTCCTTGTA
GTCACTGCTTACGGAAGCATAGAGAACGCCGTAGAGGCTATGCACCAAGGGGCATTCAACTACTTAACAAAACCTTTTTC
TTCTGAAGCACTTTTTGCTTTTATCTCTAAAGCTGAAGAACTTAAGAACCTAGTCCATGAGAATCTCTTTCTACATTCTC
AGACAACACCAGATTCGCACCCTCTGATTGCAGAAAGCAAGGCTATGAAAGATCTTCTTGCCATAGCAAAAAAAGCTGCT
TCAAGCTCAGCAAATATATTCATTCACGGAGAATCGGGATGCGGAAAGGAAGTCCTCTCCTTTTTTATCCACCACAACTC
TCCTCGAGCCAACCACCCCTATATTAAAGTTAACTGCGCAGCAATTCCTGAAACTCTCTTAGAATCAGAACTTTTTGGCC
ATGAAAAGGGAGCTTTTACAGGAGCAACCACAAAGAAGGCGGGACGTTTTGAACTTGCCCATAAAGGAACCCTCTTATTA
GATGAAATCACCGAAGTCCCAGTAAACCTTCAAGCAAAACTCCTGAGAGCTATCCAAGAAAAAGAAATCGAACACCTTGG
AGGAACCAAGACCCTCTCCGTAGATGTTCGCATCTTAGCGACCTCAAACCGAAATCTAAAAGAAGCTATCGATGATAAAA
GCTTCCGACAAGATCTGTATTACCGGTTGAATGTCATCCCTCTACACCTCCCCCCTCTAAGAGACCGACAGGACGACATC
CTCCCTCTGGCGAACTACTTCCTAAATAAGTTCTGCCGCATGAACAATACTCCTCTGAAAACCCTCTCTCCTAAAGCTCA
AGAGCTCCTCCTTAACTACCCCTGGCCAGGCAATATTCGAGAGCTCTCCAATGTTCTGGAACGTGTGGTTATCCTAGAGA
ACACCTCCCTACTCACCGAAGACATGCTCGCTTTAGCTTGA

Protein sequence : 
MAIKNILVVDDEPLLRDFLSELLTSQGFIPDTAENLRNALQMIRTRDYDLVISDMSMPDGSGLDLIKIIKQSSPHTPVLV
VTAYGSIENAVEAMHQGAFNYLTKPFSSEALFAFISKAEELKNLVHENLFLHSQTTPDSHPLIAESKAMKDLLAIAKKAA
SSSANIFIHGESGCGKEVLSFFIHHNSPRANHPYIKVNCAAIPETLLESELFGHEKGAFTGATTKKAGRFELAHKGTLLL
DEITEVPVNLQAKLLRAIQEKEIEHLGGTKTLSVDVRILATSNRNLKEAIDDKSFRQDLYYRLNVIPLHLPPLRDRQDDI
LPLANYFLNKFCRMNNTPLKTLSPKAQELLLNYPWPGNIRELSNVLERVVILENTSLLTEDMLALA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 1e-62 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 1e-62 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CPK_ORF01103 YP_005661755.1 sigma-54 dependent DNA-binding response regulator BAC0467 Protein 9e-76 44
CPK_ORF01103 YP_005661755.1 sigma-54 dependent DNA-binding response regulator BAC0089 Protein 4e-73 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CPK_ORF01103 YP_005661755.1 sigma-54 dependent DNA-binding response regulator VFG1249 Protein 7e-80 45
CPK_ORF01103 YP_005661755.1 sigma-54 dependent DNA-binding response regulator VFG1214 Protein 2e-72 44
CPK_ORF01103 YP_005661755.1 sigma-54 dependent DNA-binding response regulator VFG0116 Protein 5e-64 42