|
Name : CPK_ORF00224 (CPK_ORF00224) Accession : YP_005662614.1 Strain : Chlamydophila pneumoniae LPCoLN Genome accession: NC_017285 Putative virulence/resistance : Virulence Product : putative general secretion pathway protein E Function : - COG functional category : - COG ID : - EC number : - Position : 1155259 - 1156749 bp Length : 1491 bp Strand : - Note : - DNA sequence : ATGGCTGCTAGTATTTTATCTCAGGAGCTTTTGGATATCCTTCCTTATACATTTTTAAAGAAACACTGTCTTCTCCCTAT TGAAGAGAGTAGTGAGGCTATTACTATAGCCCATGCTACCGCGACTTCAGTCATTGCTCAAGATGAAGTCAAATTGTTAA TAAAAAAGCCTGTGCGTTTCGTTCTAAAAGAGGAATCGGAGATTCTGCAGCGCTTACAGCAGCTCTACAGCAATCGGGAA GGTAATGTTTCCGATATGTTGTTAACAATGAAAGAGGAAGATGGCACTACGATTTCGGAAGAAGAAGATCTTCTGGAGAC TACGGATACGATCCCAGTCGTACGCTTGTTGAATTTGATTCTGAAAGAAGCGATTGAAGAGCGCGCTTCGGACATTCATT TTGAGCCTTGTGAGGATTCTATGAGAATCCGCTACCGCATTGATGGTGTGCTTCACGATCGTCATTCCCCACCTTCCCAC CTGCGTTCGGCATTAACCACTCGGCTTAAAGTCCTCGCAAAGATGGATATTGCAGAGCACCGTCTTCCTCAAGACGGGCG TATTAAGATCCATATTGGTGGTCAGGAAGTGGACATGCGTGTCAGCACGGTTCCCGTGATTTATGGCGAGCGTGTTGTTC TTCGTATTTTAGATAAGCGCAATGTCATTTTGGATATCGCGGGCTTGCATATGCCTAAGGATACCGAAATACTCTTTAAA GATACCATAACAGCTCCTGAAGGGATCCTTCTGGTTACAGGACCTACAGGCAGTGGGAAAACTACGACCCTCTACAGTGT ATTACAAGAGCTTAAGGGACCTTTAACAAATATCATGACGATCGAAGATCCTCCAGAGTATAAACTGCCTGGAATTGCTC AGATTGCTGTGAAGCCTAAAATTGGGCTGACTTTCGCACGAGGGTTACGGCATTTACTGCGTCAAGATCCCGATATCCTT ATGGTCGGAGAAATCCGAGATCAGGAAACTGCAGAAATCGCAATACAAGCAGCACTGACTGGGCATTTGGTAGTGAGCAC GCTCCATACGAATGACGCTATTTCTGCGATTCCCCGTCTTCTGGATATGGGGATAGAATCCTATTTGTTATCGGCAACGC TCGTTGGCGTGGTTGCCCAGAGGCTGGTGCGAACCATTTGTCCTTATTGTAAGGTCGCTTATACTCCTGAGAATCAGGAA AAATCTTTTCTAGCTTCTCTAGGGAAAGATACAGAAATGCCTTTATATCGGGGGCAAGGGTGCGTGCATTGTTTCCGTTC CGGATATAAAGGAAGACAGGGAATTTACGAATTTTTACGCCCGAATACACTATTTCGTTCAGAAGTAGCCTCAAACCGCC CCTATCATATTTTACGAGAAACTGCAGAACAAAACGGATTCTTACCGATCTTAGAGCACGGCATCGCTCTTGCTGTATCT GGTGAGACTACCTTAGCAGAAGTCTTAAGAGTTACCAAGCGCTGTGATTAG Protein sequence : MAASILSQELLDILPYTFLKKHCLLPIEESSEAITIAHATATSVIAQDEVKLLIKKPVRFVLKEESEILQRLQQLYSNRE GNVSDMLLTMKEEDGTTISEEEDLLETTDTIPVVRLLNLILKEAIEERASDIHFEPCEDSMRIRYRIDGVLHDRHSPPSH LRSALTTRLKVLAKMDIAEHRLPQDGRIKIHIGGQEVDMRVSTVPVIYGERVVLRILDKRNVILDIAGLHMPKDTEILFK DTITAPEGILLVTGPTGSGKTTTLYSVLQELKGPLTNIMTIEDPPEYKLPGIAQIAVKPKIGLTFARGLRHLLRQDPDIL MVGEIRDQETAEIAIQAALTGHLVVSTLHTNDAISAIPRLLDMGIESYLLSATLVGVVAQRLVRTICPYCKVAYTPENQE KSFLASLGKDTEMPLYRGQGCVHCFRSGYKGRQGIYEFLRPNTLFRSEVASNRPYHILRETAEQNGFLPILEHGIALAVS GETTLAEVLRVTKRCD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 6e-90 | 45 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 4e-90 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CPK_ORF00224 | YP_005662614.1 | putative general secretion pathway protein E | VFG0182 | Protein | 1e-91 | 52 |
| CPK_ORF00224 | YP_005662614.1 | putative general secretion pathway protein E | VFG2426 | Protein | 2e-72 | 46 |
| CPK_ORF00224 | YP_005662614.1 | putative general secretion pathway protein E | VFG1876 | Protein | 2e-90 | 45 |
| CPK_ORF00224 | YP_005662614.1 | putative general secretion pathway protein E | VFG2048 | Protein | 3e-90 | 45 |
