Gene Information

Name : CPK_ORF00232 (CPK_ORF00232)
Accession : YP_005662607.1
Strain : Chlamydophila pneumoniae LPCoLN
Genome accession: NC_017285
Putative virulence/resistance : Virulence
Product : putative Yop translocation protein S
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1149702 - 1149989 bp
Length : 288 bp
Strand : +
Note : -

DNA sequence :

GTGTTAGCATTTTTCGCAACTAGTTTCAAATCTGTTCTTTTTGAGTACTCCTACCAATCATTATTACTTATTTTGATTGT
TTCGGCACCTCCCATCATCTTAGCTTCCATAGTCGGGATTATGGTTGCGATCTTCCAAGCCGCAACACAAATCCAAGAAC
AGACCTTCGCTTTTGCAGTCAAACTAGTCGTGATTTTTGGAACCTTAATGATCTCTGGAGGGTGGCTTAGCAATATGATT
TTACGCTTTGCAGGTCAGATTTTCCAAAACTTCTATAAATGGAAATAA

Protein sequence :

MLAFFATSFKSVLFEYSYQSLLLILIVSAPPIILASIVGIMVAIFQAATQIQEQTFAFAVKLVVIFGTLMISGGWLSNMI
LRFAGQIFQNFYKWK

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
ysaS	AAS66847.1	YsaS	Not tested	SSR-1	Protein	2e-11	45
hrcS	AAB06006.1	HrcS	Virulence	Hrp PAI	Protein	3e-10	45
ssaS	NP_805091.1	type III secretion protein	Virulence	SPI-2	Protein	5e-05	44
ssaS	YP_216428.1	secretion system apparatus protein SsaS	Virulence	SPI-2	Protein	4e-05	44
ssaS	NP_460385.1	type III secretion system apparatus protein	Virulence	SPI-2	Protein	4e-05	44
ssaS	CAA68200.1	secretion system apparatus, SsaS	Virulence	SPI-2	Protein	3e-05	44
ssaS	NP_456108.1	putative type III secretion protein	Virulence	SPI-2	Protein	5e-05	44
lscS	AAO18039.1	LscS	Virulence	TTSS locus	Protein	2e-10	42

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
CPK_ORF00232	YP_005662607.1	putative Yop translocation protein S	VFG2132	Protein	8e-35	89
CPK_ORF00232	YP_005662607.1	putative Yop translocation protein S	VFG0043	Protein	6e-12	44
CPK_ORF00232	YP_005662607.1	putative Yop translocation protein S	VFG0520	Protein	1e-05	44
CPK_ORF00232	YP_005662607.1	putative Yop translocation protein S	VFG0187	Protein	3e-07	42