Gene Information

Name : CPK_ORF00233 (CPK_ORF00233)
Accession : YP_005662606.1
Strain : Chlamydophila pneumoniae LPCoLN
Genome accession: NC_017285
Putative virulence/resistance : Virulence
Product : type III secretion apparatus protein, YscR/HrcR family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1148770 - 1149690 bp
Length : 921 bp
Strand : +
Note : -

DNA sequence : 
ATGCGATCCATTTTTCGATTTTTCCTTTGTTTTTTTACGCTGAGCGTCTCATGCTGTTTTGCTGACGCCAGTCTATATGA
AAACTCCTGTCCCTCGCGTTGTCAACCTACCCCTCCTCCCTCGAATTCTAATCCTTTGAACGTAGTACAACAGCCTGTTG
CTGCATCGTCAGTGCCTTCCTACATGCCCCCAGTGAATGCTGATGATGTTCTCCCTAGAGACCATCTGTCAGATGGAAGT
TTCTCAGATACGTATCCAGACATTACAACGCAAGCGATCATCTTAATTTTCTTGGCCCTATCGCCTTTCCTGGTCATGTT
GCTCACTTCGTATCTAAAGATTATCATTACTTTAGTCTTATTACGTAACGCGTTAGGAGTACAACAAACACCTCCCAGTC
AAGTCCTCAATGGGATTGCACTCATCCTATCTATTTATGTGATGTTCCCCACGGGAGTGGCTATGTATAAAGATGCTCGC
AAGGAAATCGAAGCCAATACCATTCCTCAAAGCCTCTTCACTGCAGAAGGTGCTGAAACAGTGTTTGTCGCTTTAAACAA
ATCTAAAGAACCTTTGCGCTCTTTCTTAATTCGCAACACTCCAAAAGCACAAATTCAAAGCTTTTACAAGATCTCACAGA
AAACCTTCCCTTCAGAAATTCGAGAGCACCTGACTGCCTCCGACTTTGTAATCATTATTCCTGCTTTTATTATGGGTCAG
ATAAAAAATGCTTTCGAAATTGGAGTCTTGATCTATCTACCTTTCTTTGTTATTGATTTAGTGACTGCTAACGTTCTTGT
AGCGATGCAGATGATGATGTTATCCCCGCTATCGATTTCGTTACCTTTAAAGTTACTTTTGATCGTCATGGTAGACGGAT
GGACATTACTGCTCCAAGGGCTTATGATCAGCTTTAAATAA

Protein sequence : 
MRSIFRFFLCFFTLSVSCCFADASLYENSCPSRCQPTPPPSNSNPLNVVQQPVAASSVPSYMPPVNADDVLPRDHLSDGS
FSDTYPDITTQAIILIFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGVAMYKDAR
KEIEANTIPQSLFTAEGAETVFVALNKSKEPLRSFLIRNTPKAQIQSFYKISQKTFPSEIREHLTASDFVIIIPAFIMGQ
IKNAFEIGVLIYLPFFVIDLVTANVLVAMQMMMLSPLSISLPLKLLLIVMVDGWTLLLQGLMISFK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-26 41
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 1e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CPK_ORF00233 YP_005662606.1 type III secretion apparatus protein, YscR/HrcR family VFG2131 Protein 2e-91 73
CPK_ORF00233 YP_005662606.1 type III secretion apparatus protein, YscR/HrcR family VFG2016 Protein 1e-24 41