Gene Information

Name : TCCBUS3UF1_12720 (TCCBUS3UF1_12720)
Accession : YP_005654389.1
Strain : Thermus sp. CCB_US3_UF1
Genome accession: NC_017278
Putative virulence/resistance : Resistance
Product : Inner membrane ABC transporter permease protein yddQ
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1266972 - 1267796 bp
Length : 825 bp
Strand : -
Note : similar to ABC-type dipeptide/oligopeptide/nickel transport systems, permease components COG1173; similar to Inner membrane ABC transporter permease protein yddQ of Thermomicrobium roseum DSM 5159 UniRef RepID=B9L1M0_THERP

DNA sequence : 
ATGCCTAAGCTCTTACGGCGTTTCCTTCGCAATCCAGGAGCCCTTTTGGGACTTTTCCTCCTCCTTGGCCTGGTCCTCTT
GGCCCTTCTTGGGCCCCTTTTTGCCAGGGATCCCTTGGAGCAGAATCTCCTCCAGCGCCTCAGGCCTCCTTCCCCTGAGT
ATCCCTTGGGCACCGATCAGCTAGGCCGGGATGTCTGGGCGCGCGTGGTCCACGGGGCCCGCATCAGCCTAGGGGTGGGC
TTTGGCGTGGTCCTCTTGGCCTCCCTCTTGGGCACAGCGGTGGGCCTCCTGGCGGGGGGGCTTGGGGGGCGCTGGGATAG
CCTCCTCATGCGCCTTACCGATATCTTTTTCGCCTTCCCCTCCCTCATCCTGGCCATGGCCATCGCCGCCGCCCTGGGTC
CCAACCTGGTGAATACCGTCCTGGCTGTAGCCCTGGTCACCTGGCCCATTTACGCCCGCCTGGTGCGGGCCCAGGTGCTG
GCCCTGCGGGAGCGGGAGTTTGTGGAGGCGGCTAGGGCCCTAGGGGCGAGCCAGGGGCGGATCCTCTTCCGCCACCTCCT
GCCCAATGCCCTTGCCCCTGTACTGGTCCAGGCCAGCTACGAGGTAGGGGCGGCCATTCTCACCGCGGCGGGGCTTTCCT
TCATCGGCTTCGGGGCCCAGCCGCCTACCCCAGAGTGGGGGGCCATGGTGGCGGAGACCCGAAACTACATGGCCGAGGCG
CCCTGGGCGGCCACAGCCCCCGCCTTGGGCATCCTCCTTACCGTCTTGGCCTTCAACCTCTTGGGGGATGGCCTCAGGGA
CGTGTTGGACCCTAGGGGGCGCTAG

Protein sequence : 
MPKLLRRFLRNPGALLGLFLLLGLVLLALLGPLFARDPLEQNLLQRLRPPSPEYPLGTDQLGRDVWARVVHGARISLGVG
FGVVLLASLLGTAVGLLAGGLGGRWDSLLMRLTDIFFAFPSLILAMAIAAALGPNLVNTVLAVALVTWPIYARLVRAQVL
ALREREFVEAARALGASQGRILFRHLLPNALAPVLVQASYEVGAAILTAAGLSFIGFGAQPPTPEWGAMVAETRNYMAEA
PWAATAPALGILLTVLAFNLLGDGLRDVLDPRGR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
dppC YP_005160016.1 putative peptide transport system membrane protein Not tested Not named Protein 3e-22 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TCCBUS3UF1_12720 YP_005654389.1 Inner membrane ABC transporter permease protein yddQ BAC0272 Protein 1e-28 43