Gene Information

Name : XCR_4174 (XCR_4174)
Accession : YP_005639149.1
Strain : Xanthomonas campestris 756C
Genome accession: NC_017271
Putative virulence/resistance : Unknown
Product : site-specific recombinase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4478002 - 4479255 bp
Length : 1254 bp
Strand : -
Note : -

DNA sequence : 
ATGAGTTACACCCGTGACGATGCAGGCGTAATGACGCGTCTGACCCCCAAGCTGTTGGATCAGGTCCGTGGTCGGCTGCG
GCTTCGCCACTACAGCCTGCGCACCGAGCAGGCGTATGTGGGCTGGATCCGACGCTTCATCCTGGCCAACGGTAAACGGC
ATCCAGCGCAGATGGGGCAGGCAGAGGTCGAGGCGTTTCTCACCGACCTGGCGACGCGGGGCCAGGTGTCGGCCGGCACG
CAGAATCAGGCGCTGGCGGCACTGCTGTTCCTGTATCGCGAGATCCTGGGCCTGGAGTTGCCCTGGATGGAGAACCTGGT
GCGCGCCAAGCGACCGCGGCGCATTCCAGTGGTGCTCTCGGTCGAGGAGGTGACGCGCCTGCTGACGATGCTGGAGGGGG
CGTGTCGGCTGATGGCGGGGCTGCTCTACGGCAGCGGGATGCGGTTGCTGGAATGCCTGCGGTTGCGGATCAAGGATGTG
GACATGGTGCGTTGCGAGATCGTGGTGCGCGACGGAAAAGGCGGCAAGGATCGGCGGGTGCCGCTGCCGCGCAGCCTGCG
AGGGGAATTAATGCAGCAGCGCGAGCGGGCGCTGCTGCTGCATGCCGCTGATCTCGCCGAGGGAGCAGGACGGGTGTTCC
TGCCGCATGCGTTGGCGCGCAAGTATCCCACTGCCGATGTCGAGCCCGGCTGGCAGTATCTGTTCCCCGCCGCGCGTCGA
TCGGTGGATCCGCGCAGTGGCCGAGTTGGTCGGCATCACGTATCGGAGGAGATCCTGCAGCGTGCGGTACAGGCGGCACG
GCGCCGTGCGGGGATCGACAAGCCGGCCACCTGCCACACCCTGCGGCATTCGTTCGCCACGCATCTGCTGGAGGCCGGCC
ACGATATCCGCACTGTGCAGGAGCTGTTGGGCCACAAGGATGTGGCAACCACGCAGATCTACACGCATGTGCTGGGGCGC
GGAGCGTCGGCGGTGCGCAGCCCGCTGGATGGCTGCATCTCAGCGGTGGGTGAGGTTGCCGCCAATAAGAGCAGCGATCA
AAACGACTGCGCAGCCGCCAGGCGTGCGCGGCCGGTGCCCGGAGTCGGCATTCCCCCGTACGCCCCGGTTCCGAGCGCTG
TCCTCCCACCTGATGGCTGCTCGCTACGTTTTGTTAGCGGCTCTAAAAAGCCACCCCACGCTGGGTTTGCAGTCAGGCAT
CGGGAAGGAAGTCCCTTCCACCGTCCGATGCCGGGATACGACGAAGACCGCTAA

Protein sequence : 
MSYTRDDAGVMTRLTPKLLDQVRGRLRLRHYSLRTEQAYVGWIRRFILANGKRHPAQMGQAEVEAFLTDLATRGQVSAGT
QNQALAALLFLYREILGLELPWMENLVRAKRPRRIPVVLSVEEVTRLLTMLEGACRLMAGLLYGSGMRLLECLRLRIKDV
DMVRCEIVVRDGKGGKDRRVPLPRSLRGELMQQRERALLLHAADLAEGAGRVFLPHALARKYPTADVEPGWQYLFPAARR
SVDPRSGRVGRHHVSEEILQRAVQAARRRAGIDKPATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVATTQIYTHVLGR
GASAVRSPLDGCISAVGEVAANKSSDQNDCAAARRARPVPGVGIPPYAPVPSAVLPPDGCSLRFVSGSKKPPHAGFAVRH
REGSPFHRPMPGYDEDR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 1e-73 56
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 2e-74 56
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 1e-74 56
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 1e-73 56
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 2e-74 56
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 1e-74 56
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 1e-73 56
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 2e-74 56
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 1e-74 56
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 1e-73 56
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 1e-74 56
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 1e-73 56
intI1 AAK02045.1 integrase Not tested SGI1 Protein 1e-73 56
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 1e-74 56
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 3e-74 56
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 1e-73 56
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 1e-74 56
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 3e-74 56
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 1e-73 56
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 4e-74 56
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 1e-74 56
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 1e-74 56
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 1e-73 56
intI YP_001844881.1 integrase Not tested AbaR20 Protein 2e-74 56
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 1e-74 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XCR_4174 YP_005639149.1 site-specific recombinase VFG1028 Protein 8e-74 56