Gene Information

Name : XCR_3471 (XCR_3471)
Accession : YP_005638451.1
Strain : Xanthomonas campestris 756C
Genome accession: NC_017271
Putative virulence/resistance : Virulence
Product : RadC family DNA repair protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3681691 - 3682170 bp
Length : 480 bp
Strand : -
Note : -

DNA sequence : 
ATGAAGCGCACCCAAGACCTGAAGGCCCAATACCAACTCCAGATGGACGAGGAAGGCATCTTGCTCGCTGCAGCGACCAT
CCTGGAGCAACGCCTTCAACGCCAAGGCCGCATCCACAGTCCCGAGCAGGCCGGCAGCTACCTGGTCGCCCGCTGCGCCC
ACCTGCCGCACGAGGTTTTCGGCGCCGTATTCCTCGACAACAAGCACCACATCCTCGCGACCGAGCACCTGTTCTCCGGC
ACCGTCGATGCCTGCGACGTTCACCCCCGGGTCGTCGCCAAGCGTGCCCTGGAGCTCAACGCGGTCGCTGTCATCCTCTT
CCACAACCATCCGAGCGGGGACCCGGAGCCCAGCCAAGCCGACCGCCAAGTCACCAAGCGCCTGCAGGAAGCATTGGGCC
TCCTGGACATTCGGGTCATTGACCACGTGGTCATCGGTGGCCGGCAGCACGTCAGCCTGGCGGCAAGGGGGTGGGCATAG

Protein sequence : 
MKRTQDLKAQYQLQMDEEGILLAAATILEQRLQRQGRIHSPEQAGSYLVARCAHLPHEVFGAVFLDNKHHILATEHLFSG
TVDACDVHPRVVAKRALELNAVAVILFHNHPSGDPEPSQADRQVTKRLQEALGLLDIRVIDHVVIGGRQHVSLAARGWA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 1e-29 55
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 1e-29 55
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 8e-30 55
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 2e-21 47
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 4e-25 47
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 4e-25 46
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 5e-21 46
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 6e-22 45
unnamed AAL08475.1 unknown Not tested SRL Protein 4e-22 45
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 4e-22 44
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 2e-22 44
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 9e-22 44
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 1e-22 44
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 4e-22 44
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 2e-22 44
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 2e-22 44
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 2e-22 44
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 1e-20 43
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 4e-21 43
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 4e-21 43
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 3e-21 43
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 2e-21 43
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 5e-22 43
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 7e-22 43
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 7e-22 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XCR_3471 YP_005638451.1 RadC family DNA repair protein VFG1119 Protein 4e-30 55
XCR_3471 YP_005638451.1 RadC family DNA repair protein VFG1678 Protein 8e-22 47
XCR_3471 YP_005638451.1 RadC family DNA repair protein VFG1066 Protein 1e-22 45
XCR_3471 YP_005638451.1 RadC family DNA repair protein VFG1528 Protein 8e-23 44
XCR_3471 YP_005638451.1 RadC family DNA repair protein VFG1617 Protein 3e-22 44
XCR_3471 YP_005638451.1 RadC family DNA repair protein VFG0660 Protein 2e-22 43