|
Name : pilB (XCR_3444) Accession : YP_005638424.1 Strain : Xanthomonas campestris 756C Genome accession: NC_017271 Putative virulence/resistance : Virulence Product : type IV-A pilus assembly ATPase PilB Function : - COG functional category : - COG ID : - EC number : - Position : 3649514 - 3651046 bp Length : 1533 bp Strand : - Note : - DNA sequence : ATGCCGCTACTTGATGTGTCGGCGTTCGACGCCAGCCAGAATGCGGTCAAGCTAGTCAGTGAAGAGTTGCTCCAGAAATA TCAAGTGCTGCCTTTGTTCAAACGCGGCAACCGGTTGTTCGTGGGGGTGAGCAACCCGACTCAGACCAGGGCGCTGGACG ATATCAAGTTCCATACGAACCTGGTGGTCGAGCCTATCCTGGTCGACGAGGACCAGATTCGTCGCACCTTGGAGCAGTGG CAGGCCAGCAATGCGTCGCTTGGCTCATCGCTCGGTGACGACGATGACGACATGGGGGATTTGGACGTGTCGGCCGGGGA CGAGGACATGGGCGCCGGCGGGGATTCCGGGGTCGATGCCAAGGGCGATGACACGCCGGTGGTGAAGTTCGTCAACAAGG TGCTGGTGGATGCGATCCGGCGGGGAGCCTCGGACATCCATTTCGAGCCGTATGAAGACGACTATCGGGTGCGGTTGCGG ATCGATGGGCTGTTGAAGAACGTGGCCAAGGCGCCGGTGAAGCTCAACCAGCGCATCGCGGCGCGCCTGAAGGTGATGTC GCAGCTGGACATCGCCGAGAAGCGGGTGCCGCAGGACGGGCGCATCAAGCTCAACCTGTCCAAGACCAAGCAGATCGACT TCCGCGTGAGCACCTTGCCGACCTTGTTCGGCGAAAAGGTTGTGCTGCGTATCCTGGACGGCAGCGCGGCCAAGCTCGGC ATCGAGAAGCTGGGCTACGAGGCGGACCAGCAGAAGCTATTCCTGGAGGCGATCCACAAACCCTACGGCATGGTGCTGGT GACCGGGCCGACCGGTTCGGGCAAGACGGTGTCGTTGTACACGGCACTCGGCATCCTCAACGACGAGACGCGCAACATCT CCACCGCCGAGGACCCGGTGGAAATCCGGTTGCCCGGCGTCAATCAGGTGCAGCAGAACAACAAGCGCGGCATGACCTTC GCCGCGGCGCTGCGTTCGTTCTTGCGCCAGGATCCGGACATCATCATGGTCGGCGAAATCCGCGACCTGGAGACGGCCGA GATTGCGATCAAGGCCGCGCAGACCGGTCACATGGTGCTGTCCACGCTGCACACCAACGATGCGCCGCAGACCATCGCGC GTTTGATGAACATGGGCATCGCGCCTTACAACATCACCTCGTCGGTGACCCTGGTGATCGCGCAGCGTCTGGCGCGGCGC CTGTGCAACAACTGCAAGCGCAAATCGACCTTGCCCGAGCATGCGTTGCTGGCCGAAGGCTTCACGCCTGCGCAGATCGC TGCCGGGATCGAGCTGTATGAGGCGGTCGGTTGCGACGAGTGTACCGAAGGCTACAAGGGCCGTACCGGCATCTATCAGG TGATGCCGATGACGGACGAAATCGGCGCGATCGTGCTGGAAGGCGGCAATGCGATGCAGATCGCCGAGGCTGCGCAGAAG ATCGGTATCCGCGACCTGCGCCAGTCGGCGTTAATGAAGGCTTCGCACGGCGTGACCAGCCTGGCCGAAATCAATCGGGT GACGAAGGATTGA Protein sequence : MPLLDVSAFDASQNAVKLVSEELLQKYQVLPLFKRGNRLFVGVSNPTQTRALDDIKFHTNLVVEPILVDEDQIRRTLEQW QASNASLGSSLGDDDDDMGDLDVSAGDEDMGAGGDSGVDAKGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRLR IDGLLKNVAKAPVKLNQRIAARLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDGSAAKLG IEKLGYEADQQKLFLEAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTF AAALRSFLRQDPDIIMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARR LCNNCKRKSTLPEHALLAEGFTPAQIAAGIELYEAVGCDECTEGYKGRTGIYQVMPMTDEIGAIVLEGGNAMQIAEAAQK IGIRDLRQSALMKASHGVTSLAEINRVTKD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 4e-80 | 44 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 3e-80 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| pilB | YP_005638424.1 | type IV-A pilus assembly ATPase PilB | VFG0112 | Protein | 1e-141 | 57 |
| pilB | YP_005638424.1 | type IV-A pilus assembly ATPase PilB | VFG1880 | Protein | 4e-134 | 54 |
| pilB | YP_005638424.1 | type IV-A pilus assembly ATPase PilB | VFG2426 | Protein | 3e-98 | 53 |
| pilB | YP_005638424.1 | type IV-A pilus assembly ATPase PilB | VFG0233 | Protein | 4e-127 | 51 |
| pilB | YP_005638424.1 | type IV-A pilus assembly ATPase PilB | VFG1876 | Protein | 5e-79 | 48 |
| pilB | YP_005638424.1 | type IV-A pilus assembly ATPase PilB | VFG0182 | Protein | 1e-83 | 48 |
| pilB | YP_005638424.1 | type IV-A pilus assembly ATPase PilB | VFG2048 | Protein | 4e-80 | 45 |
