Gene Information

Name : XCR_3440 (XCR_3440)
Accession : YP_005638420.1
Strain : Xanthomonas campestris 756C
Genome accession: NC_017271
Putative virulence/resistance : Virulence
Product : two-component system response regulator protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3646638 - 3648041 bp
Length : 1404 bp
Strand : +
Note : -

DNA sequence : 
GTGCGCAACATGAACGAAACGAAAAGTGCCTTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCT
GGGCCGCATGGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAACTGCTGGCCAGCAACCCGTACGACC
TGTGCCTGACCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACG
CCGGTGGCCATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAG
CAAGCCGGTGGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGGCCGGCGCCGC
CACCGCCTCCGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAG
GTCGCGCGCAGCCAGGCGCCGGTCTACATCGTTGGCGAATCCGGTGTGGGCAAGGAATTGGTGGCCCGCACCATCCACGA
GCAGGGCGCACGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCT
TCGGCCATAAGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCGGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTG
TTTCTGGACGAAGTGGCCGAGCTACCGCTGCAGATGCAGGTGAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCC
GGTCGGCGCCTCGGGCGAAACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAAGACCTGGGCGACCTGGTCTCCG
ACGGCCGCTTTCGTCACGACCTGTACTACCGCATCAACGTGATCGAGCTCCGTGTGCCACCGCTGCGCGAGCGCAGTGGC
GACCTGCCGCAACTGGCCGCCGCCATCATTGCGCGGCTGGCACGCAGCCACGGCCGCCCGATTCCGCTGCTGACCCAGTC
AGCCCTGGATGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATTCTCGAACGCGCCCTGGCCC
TGGCCGAAGACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCAGCCCCGGC
AGCGCCGCCATCGAACCGCGCGAAGCCGTGGTCGACATCGATCCCGCCTCGGCCGCCCTGCCCTCTTACATCGAGCAACT
CGAGCGCGCCGCGATCCAGAAAGCGCTGGAGGAGAATCGTTGGAACAAGACCAGAACTGCCGCGCAGCTCGGCATCACGT
TTCGTGCGTTGCGCTACAAGCTCAAGAAGTTGGGGATGGAGTGA

Protein sequence : 
MRNMNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQT
PVAMITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGK
VARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTL
FLDEVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSG
DLPQLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAASPG
SAAIEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 1e-101 49
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 1e-101 49

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XCR_3440 YP_005638420.1 two-component system response regulator protein BAC0467 Protein 4e-65 43
XCR_3440 YP_005638420.1 two-component system response regulator protein BAC0089 Protein 9e-70 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XCR_3440 YP_005638420.1 two-component system response regulator protein VFG1214 Protein 2e-125 63
XCR_3440 YP_005638420.1 two-component system response regulator protein VFG0116 Protein 6e-55 41