Gene Information

Name : hpa2 (XCR_1494)
Accession : YP_005636511.1
Strain : Xanthomonas campestris 756C
Genome accession: NC_017271
Putative virulence/resistance : Virulence
Product : lysozyme-related protein Hpa2
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1522098 - 1522514 bp
Length : 417 bp
Strand : +
Note : -

DNA sequence :
TTGATTGCGGCGGCGTTGCTGTGCGCCGCGCCGCTCGCACGCGCAGACTGTTTTGAAGAAGCCGCCGGCTATCAACATGT
CAATCCATGGGTGCTACGCGCCATTGCGTGGCAGGAATCACGTGGTCGTGCCGACGCGATCCATCGCAACAACAACGGCA
CGATCGATTATGGAAAGATGCAGATCAATTCGATCCATCTGCGACGTCTTTCCAGCTACGGTATCTCCAGGGATGCGTTG
ATGCAGCCGTGCGTCAGCGTGTATGTCGCCGCCTGGCGGCTGCGCGAGATGATCAATAAATACGGGAATACCTGGGCCGC
TGTGGGTGCCTATCATTCCGAAACGCCCGCGGAGCGCGATAAATATGCGCACGCCATTCATGCGATTCTGATCAGGCGCG
GTGTGGTTGTCGAATGA

Protein sequence :
MIAAALLCAAPLARADCFEEAAGYQHVNPWVLRAIAWQESRGRADAIHRNNNGTIDYGKMQINSIHLRRLSSYGISRDAL
MQPCVSVYVAAWRLREMINKYGNTWAAVGAYHSETPAERDKYAHAIHAILIRRGVVVE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
XC_3001 YP_244069.1 Hpa2 protein Virulence Hrp PAI Protein 3e-53 100
hpa2 NP_636615.1 Hpa2 protein Virulence Hrp PAI Protein 3e-53 100
hpaH YP_362172.1 transglycosylase HpaH Virulence Hrp PAI Protein 3e-51 93
hpaH AAL78295.1 HpaH precursor Virulence Hrp PAI Protein 2e-51 93
hpa2 NP_640772.1 Hpa2 protein Virulence Hrp PAI Protein 2e-51 92
hpa2 AAF61278.1 Hpa2 precursor Virulence Hrp PAI Protein 2e-50 91
unnamed AAC38373.1 rOrf3 Not tested LEE Protein 9e-14 43
Z5131 NP_290279.1 hypothetical protein Not tested LEE Protein 5e-14 41
ECs4579 NP_312606.1 hypothetical protein Not tested LEE Protein 5e-14 41
unnamed AAC31524.1 L0045 Not tested LEE Protein 3e-14 41
ECO111_3763 YP_003236099.1 hypothetical protein Not tested LEE Protein 5e-14 41
unnamed ACU09469.1 putative lytic transglycosylase Not tested LEE Protein 3e-14 41
ECO103_3629 YP_003223486.1 hypothetical protein Not tested LEE Protein 2e-14 41
unnamed AAK26704.1 unknown Not tested LEE Protein 1e-14 41
ECO26_5260 YP_003232142.1 hypothetical protein Not tested LEE Protein 2e-14 41
unnamed AAL57531.1 unknown Not tested LEE Protein 1e-14 41
st13 CAC81851.1 ST13 protein Not tested LEE II Protein 1e-14 41
unnamed CAI43885.1 hypothetical protein Not tested LEE Protein 1e-14 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hpa2 YP_005636511.1 lysozyme-related protein Hpa2 VFG0719 Protein 4e-14 43
hpa2 YP_005636511.1 lysozyme-related protein Hpa2 VFG0994 Protein 3e-12 42
hpa2 YP_005636511.1 lysozyme-related protein Hpa2 VFG0823 Protein 1e-14 41