Gene Information

Name : hrcR (XCR_1478)
Accession : YP_005636495.1
Strain : Xanthomonas campestris 756C
Genome accession: NC_017271
Putative virulence/resistance : Virulence
Product : type III secretion protein HrcR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1507979 - 1508623 bp
Length : 645 bp
Strand : -
Note : -

DNA sequence : 
ATGCAGATGCCTGATGTCGGCTCGCTGCTGCTGGTGGTCATCATGCTGGGCTTGCTGCCCTTCGCAGCGATGGTGGTCAC
CTCCTACACCAAGATCGTGGTCGTGCTCGGCTTGCTGCGCAATGCCATCGGCGTGCAGCAGGTGCCGCCGAACATGGTGC
TCAACGGCGTCGCGTTGCTGGTGTCGTGCTTTGTGATGGCGCCGGTGGGCATGGAGGCGTTCAAGGCCGCGCAGAATTAC
AGTCCCGGTGCCGAGAACAGCCGTGTAGTGGTATTGCTCGATGCCTGTCGCGAACCGTTTCGGCAGTTCCTGCTCAAGCA
CACCCGCGAGCGCGAGAAAGCCTTTTTCATTCGCTCGGCGCAGCAGATCTGGCCCAAGGACAAGGCCGATACGCTCAAGC
CTGACGATCTTCTGGTGCTGGCACCGGCATTCACGCTGAGCGAGCTGACCGAGGCATTCCGCATCGGATTTCTGCTGTAT
CTGGTCTTCATCGTGATCGATCTGGTGGTGGCCAATGCGTTGATGGCGATGGGCCTTTCGCAGGTGACGCCAACCAACGT
GGCCATTCCGTTCAAACTGCTGTTGTTCGTGGCGCTGGATGGCTGGTCCATGCTGATCCATGGCCTGGTCCTGAGTTATC
GGTGA

Protein sequence : 
MQMPDVGSLLLVVIMLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQNY
SPGAENSRVVVLLDACREPFRQFLLKHTREREKAFFIRSAQQIWPKDKADTLKPDDLLVLAPAFTLSELTEAFRIGFLLY
LVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVALDGWSMLIHGLVLSYR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-89 99
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-89 99
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 1e-87 97
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 1e-87 97
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 7e-88 97
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 1e-86 96
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 1e-85 95
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 2e-86 95
lscR AAO18040.1 LscR Virulence TTSS locus Protein 9e-46 52
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 3e-38 46
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 3e-33 44
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 3e-33 44
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 3e-33 44
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 8e-30 44
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 6e-30 44
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 3e-29 44
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 3e-29 44
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 7e-30 44
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 7e-30 44
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-34 43
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-34 43
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 5e-33 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 1e-35 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 4e-35 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 4e-35 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-35 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-35 42
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 4e-32 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 1e-34 42
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 1e-34 42
escR AAC31528.1 L0049 Virulence LEE Protein 1e-34 42
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 1e-34 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 1e-34 42
escR AAK26700.1 EscR Virulence LEE Protein 9e-35 42
escR AAL57527.1 EscR Virulence LEE Protein 9e-35 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 9e-35 42
escR CAI43889.1 EscR protein Virulence LEE Protein 9e-35 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 1e-34 42
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 2e-34 42
escR AAC38369.1 EscR Virulence LEE Protein 8e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hrcR YP_005636495.1 type III secretion protein HrcR VFG0394 Protein 6e-45 53
hrcR YP_005636495.1 type III secretion protein HrcR VFG0188 Protein 2e-48 52
hrcR YP_005636495.1 type III secretion protein HrcR VFG0044 Protein 8e-45 48
hrcR YP_005636495.1 type III secretion protein HrcR VFG0519 Protein 6e-36 42
hrcR YP_005636495.1 type III secretion protein HrcR VFG0827 Protein 5e-35 42
hrcR YP_005636495.1 type III secretion protein HrcR VFG0715 Protein 4e-34 41
hrcR YP_005636495.1 type III secretion protein HrcR VFG2338 Protein 2e-32 41
hrcR YP_005636495.1 type III secretion protein HrcR VFG2016 Protein 5e-33 41
hrcR YP_005636495.1 type III secretion protein HrcR VFG2494 Protein 3e-33 41