Gene Information

Name : VCLMA_A1539 (VCLMA_A1539)
Accession : YP_005634153.1
Strain :
Genome accession: NC_017270
Putative virulence/resistance : Virulence
Product : TRAP-type transport system, large permease
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1765881 - 1767164 bp
Length : 1284 bp
Strand : -
Note : -

DNA sequence : 
ATGGTTGGTTCAATTTTTGGTTGGTTAGGATTGTTATTTGCGGGCATGCCAGTAGGTTTTTCACTTATTTTTGTTGCATT
AGCTTTCCTCATTCTCACCAATAGTACAGGGATTAATTTTGCGGCTCAGCAAATGCTGGGTGGGATCGACAACTTCACGT
TGCTAGCCGTTCCATTTTTTGTGTTAACTGGCCATCTAATGAATAGTGCCGGTATTACAGAAAGAATCTTCAACTTCGCG
AAGTCTCTCGTTGGCCATATTACGGGCAGCTTGGGTCATGTAAATATAATGGCAAGCTTGTTGTTCTCTGGAATGTCTGG
CTCAGCATTGGCAGATGCAGGTGGGTTAGGTCAGCTTGAAATCAAATCCATGCGTGATGCGAAGTATCACGATGATTTCG
CGGGCGGGCTGACAGCGGCATCTTGCATCATTGGTCCTCTGGTGCCGCCATCAGTACCACTAGTCATATACGGTGTGGTT
TCCAATACCTCTATTGGCGCATTATTTTTAGCGGGTGCGATACCTGGTTTGCTGTGTTGTATTGCCTTGATGGTGATGAG
TTATTTTATCTGCAAAAAGCGCGGATATATGACATTGCCTAAAGCGAGCAGACGTGAGCAATTTAAATCACTTAAAGAAG
CATTTTTATCGTTGCTGACGCCAGTCATTATCATTGGTGGGATCTTCTCTGGTAAATTTACGCCAACTGAAGCGGCTGCT
GTTTCATCTCTCTACGCACTATTTTTAGGTACAGTTGTTTATAACACGCTCACGTTACAGGGGTTCATCGAAATTCTGAA
AGAAACGGTCAATACCACAGCCGTGGTTGCTCTGATGGTTATGGGCGTGACTGTTTTTGGGTGGATTGTGGCTCGCGAAC
AGTTACCACAGATGTTGGCTGATTATTTCTTAACAATCAGTGATAACCCACTCGTACTGCTTCTGTTGATCAACTTGTTG
CTCCTCTTCTTGGGCACGTTTATTGAGTCATTGGCCTTGCTGTTGCTGCTAGTTCCATTCTTGGTACCAGTGGCTTCAGC
GGTGGGTATCGATCCTGTTCACTTCGGTGTAATGGCGATTCTTAACCTAATGATTGGCATTCTTACCCCACCAATGGGAA
TGGCTTTATATGTGGTTTCTCGAGTCGGAGATATCCCATTCCATACGCTTACGCGTGGTGTTTTACCACTACTGGTGCCG
CTATTCATCGTGTTGGCGCTGGTGGCTGTATTCCCTCAATTTACTCTGCTACTACCGGAATTATTCCTCGGATACGGACA
GTAG

Protein sequence : 
MVGSIFGWLGLLFAGMPVGFSLIFVALAFLILTNSTGINFAAQQMLGGIDNFTLLAVPFFVLTGHLMNSAGITERIFNFA
KSLVGHITGSLGHVNIMASLLFSGMSGSALADAGGLGQLEIKSMRDAKYHDDFAGGLTAASCIIGPLVPPSVPLVIYGVV
SNTSIGALFLAGAIPGLLCCIALMVMSYFICKKRGYMTLPKASRREQFKSLKEAFLSLLTPVIIIGGIFSGKFTPTEAAA
VSSLYALFLGTVVYNTLTLQGFIEILKETVNTTAVVALMVMGVTVFGWIVAREQLPQMLADYFLTISDNPLVLLLLINLL
LLFLGTFIESLALLLLLVPFLVPVASAVGIDPVHFGVMAILNLMIGILTPPMGMALYVVSRVGDIPFHTLTRGVLPLLVP
LFIVLALVAVFPQFTLLLPELFLGYGQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 5e-158 100
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 7e-158 100
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 7e-158 100

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VCLMA_A1539 YP_005634153.1 TRAP-type transport system, large permease VFG1110 Protein 3e-158 100