Gene Information

Name : fliP (TPChic_0718)
Accession : YP_005631575.1
Strain : Treponema pallidum Chicago
Genome accession: NC_017268
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 787135 - 787950 bp
Length : 816 bp
Strand : -
Note : identified by match to protein family HMM PF00813; match to protein family HMM TIGR01103

DNA sequence : 
GTGATCCGTGCTCGTGCGTGCGTACGCCGCGCGCTCTTTTTCGTGTCATTGTTTTTCTTCCCGCTTTTTGCACAGGATGC
GCGCGGAGGTGTCGAGCGCGGCGTTACTGGTATCAATGCTGAGCGGCCGGCTTCACGCATTCCTTTCATCAATTTTGATA
TCCGGGAGCCCCAGACCAATCGGGAAGTGGCTTTTTCTGTGCAACTTCTCCTGTTGCTCACGCTCATTTCCCTTGCGCCG
AGTATCTTGCTTTTGATGACTGCCTTTCTGCGCTTGTCTATCGTCCTTGATTTTATCAAACGTGCATTGTCGCTGCAGCA
AGTGCCGCCCACACAGGTTTTACACGGCATAGCATTGTTTCTCGCCCTGTTTATCATGTGGCCGGTCTTTACTGAGATTT
ATGCCAAATCGTTTAAACCTCTTACCGATGGCCAGGTAGATATCCAGACTGCATATACGGAGGCAGAAAGACCGCTGCGT
GTCTTCATGTATCGTCAGATGGCGCATGACCCGTCTTCTGTGCGTCTTTGTATGTCCATGGCAAAGCTGCCTAAGCCAGA
TACACTTGCGGACGTGCCCACGTATGTCCTTATCCCTGCTTTTATCCTGCATGAGCTGACCGTAGCCTTTCAGATTGGTA
TCTTCCTGTACTTACCTTTCATAATTGTTGATATGGTTGTAGCGAGTATTTTGATGTCTATGGGTATGATTATGCTGCCG
CCGGTTCAGATTTCATTGCCGTTTAAATTGGTTTTGTTCGTGCTGGTGGACGGTTGGAATCTGCTGATAGATAGGCTTTT
TCATTCGTTTTTATAA

Protein sequence : 
MIRARACVRRALFFVSLFFFPLFAQDARGGVERGVTGINAERPASRIPFINFDIREPQTNREVAFSVQLLLLLTLISLAP
SILLLMTAFLRLSIVLDFIKRALSLQQVPPTQVLHGIALFLALFIMWPVFTEIYAKSFKPLTDGQVDIQTAYTEAERPLR
VFMYRQMAHDPSSVRLCMSMAKLPKPDTLADVPTYVLIPAFILHELTVAFQIGIFLYLPFIIVDMVVASILMSMGMIMLP
PVQISLPFKLVLFVLVDGWNLLIDRLFHSFL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 9e-29 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 9e-29 42
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 9e-29 42
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 7e-28 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_005631575.1 flagellar biosynthetic protein FliP VFG0044 Protein 2e-28 41