Gene Information

Name : xopF1 (XOC_4455)
Accession : YP_005630687.1
Strain : Xanthomonas oryzae BLS256
Genome accession: NC_017267
Putative virulence/resistance : Virulence
Product : type III effector protein XopF1
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4586033 - 4587964 bp
Length : 1932 bp
Strand : -
Note : -

DNA sequence :
ATGAAACGCTCCGGCGATATCGGGGCCGCTTCCAGTAGCCGCGCAGCCTCGCACTCTCCTTTACAACCAACGCAGCCCGA
AGGCGTTGCTCCCCCGCGGGAAGAACACGCAGATTTCATGCCGACTGGACCGCTTTTGGGCTTGCCCTCTTCCAGCGCGG
CGCTGCGCAGTCGTCGCACATCTTTGAGCGGTCGCGCCAAGCCTCATGCAGATTACACCGAGGAGGTCATGTCCCAAGTC
CAGGAAATCAACGAACCGGCTGGACCTGCCGCCGCGGCGACCTATGCCGAGCGCAGCACGGCGGCGGCCGCCAAGGTGAA
AGCGCAGCTACGCGCCCGCCTGGACGCTCTGCCATTTGCTGCGCCCTCGAAAGAGCAGACCGCCCTGCAGGCCGCCTATC
TGCAATGGGCTGACGCACGCGTGCAGGAACGCATCACTGCCTTCGGGCCGGATGCCGGGTACCAGGCCGTCGGTGACATG
AAGACAGCGGGCATAAAAGCGGCATTGCCGATTGCCTACCAATGTCTACGGTCGTTCATTCTCGGTGCGATGCGTAATCC
GGTCGGTCTGGCCACGGGTGCAGCCTATGCGGCCCGGCGCCCGGTTGACGCGGAGGAGCTGAGTACGGTGATGGTGTCGG
GTATCGCGGCGGGGTCGGCGTCCTATACCAGCGATACTTTGTTGATCCCGGCAATGGACCGGCGCACGCGCGTTGCCAAC
ATGCCGAAGTTTCAGGCCGTCGACCCCAAAATCCTGGAGCCAGATCCACCACCGGTCATTCTGGAAGTGACCGCTGAAGG
CAAGCGCTTCACGCGTCTGGGCGATGACGATGCGCCGACGCTTGCCGAACTCAAGGCCCAGACCTACGACCGCCGCCTGG
TGATCACGCAGCGCCAATCGAACCTGGACGACAAGTCACTCAATACCTTGTTGCTCAAGCCAGTGATCAACGCAATATTC
AATGCCGCGCGCCGGACTGGTGGTAATCCGGATTTGCTGACGCCTGCCGGCCAGCTGGGGTTGAGCGCACTCGCCATTGG
CGGCGCCGGGGTCGTTCAAAAGGCATTGCTTGAGACAGGCAAAGCTGTGCCCCGGACCGGCCAAACGAGTGTCCCGGACC
TAGTTGGCGGAGAGCAACGGCTGAATCTGTTCGCATTGGCGTTGCCCGACAAAGAGCGCCGGCCTGCACAATGGTCCGAC
GCCGTGCATTTCCCGCCTAAATATTTGCTGGACACCGGAAAGGAAGCGTTGGCGTTGGCAAGGCAGGGCGTCAACAGCGC
AAACGCGATCGCCACCACGGTACGCGACCTGTTGACCCGCCACATGCTGAGCAATGTCATTTCCAGCTTCGCCTCGATTG
GGGCTGCGCGCATCATCGCAGCGCCGTTGCGTGGGGGGAGCCACAGACCTGTTGCTGGCGAAGCTGCCAATTCCACGGCT
GTGGTCGCGCAGCAGGCCGTGCAAACCATGTTCAACGATACGTTATGGAATGCGCTCAAGGCCAAGAATGGCACCAATAC
CTCCCAGGCGGCGCGCCTGGACAACGAAGGTGCCGCGCTTGCAGCCGAGTATAAACGTACCATCAAACAAACAATCGAGG
CCCTGGCCGAGCCCGTGGACCAGGCGATCGCCAGGCTTTCGGATCAGACACGTGCCATGGAGGAGGGGATGCGCGTCGCG
CCTGGCGCTTGGCTGCGTGGCCATGCACTGCGTACCGCCCTGCAGACATTGCTTAAAGAGATCGGCACGCAGTCCGTCTC
GATCGCGACCATCGATGCGGTACGTACTGCACTGCGCGAGAAGGGGGGGCAAACGTCTAGAGCCGTACCCCCCGACGCGG
CCACGCAGGCACTGGATGGTCAGCTGCAAACGCTCAAGCGTGCACTGCATGACAGCGAAGAACTTCGCCAGTGGCAAAGC
GGGCGAGCATGA

Protein sequence :
MKRSGDIGAASSSRAASHSPLQPTQPEGVAPPREEHADFMPTGPLLGLPSSSAALRSRRTSLSGRAKPHADYTEEVMSQV
QEINEPAGPAAAATYAERSTAAAAKVKAQLRARLDALPFAAPSKEQTALQAAYLQWADARVQERITAFGPDAGYQAVGDM
KTAGIKAALPIAYQCLRSFILGAMRNPVGLATGAAYAARRPVDAEELSTVMVSGIAAGSASYTSDTLLIPAMDRRTRVAN
MPKFQAVDPKILEPDPPPVILEVTAEGKRFTRLGDDDAPTLAELKAQTYDRRLVITQRQSNLDDKSLNTLLLKPVINAIF
NAARRTGGNPDLLTPAGQLGLSALAIGGAGVVQKALLETGKAVPRTGQTSVPDLVGGEQRLNLFALALPDKERRPAQWSD
AVHFPPKYLLDTGKEALALARQGVNSANAIATTVRDLLTRHMLSNVISSFASIGAARIIAAPLRGGSHRPVAGEAANSTA
VVAQQAVQTMFNDTLWNALKAKNGTNTSQAARLDNEGAALAAEYKRTIKQTIEALAEPVDQAIARLSDQTRAMEEGMRVA
PGAWLRGHALRTALQTLLKEIGTQSVSIATIDAVRTALREKGGQTSRAVPPDAATQALDGQLQTLKRALHDSEELRQWQS
GRA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
XOO0074 YP_198713.1 hypothetical protein Not tested Hrp PAI Protein 0.0 92
xopF1 YP_362145.1 outer protein F1 Virulence Hrp PAI Protein 0.0 84