Gene Information

Name : hrcR (XOC_4448)
Accession : YP_005630680.1
Strain : Xanthomonas oryzae BLS256
Genome accession: NC_017267
Putative virulence/resistance : Virulence
Product : type III secretion protein HrcR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4581453 - 4582097 bp
Length : 645 bp
Strand : +
Note : -

DNA sequence : 
ATGCAGATGCCTGACGTTGGCTCGCTGCTGCTGGTGGTCATCATGCTGGGCTTGCTGCCCTTCGCAGCGTTGGTGGTCAC
CTCCTACACCAAGATCGTGGTCGTGCTCGGCTTGCTGCGCAATGCGATCGGGGTGCAGCAGGTGCCGCCCAACATGGTCC
TCAATGGCGTTGCATTGCTGGTGTCGTGCTTTGTGATGGCGCCGGTGGGCATGGAGGCGTTCAAGGCCGCACAAAACTAC
GGCGCCGGGTCGGATAACAGCCGCATTGTGGTGCTGCTAGACGCCTGCCGGGAGCCCTTTCGGCAATTCCTCCTCAAGCA
CACACGGGAGCGCGAAAAGGCATTTTTCATGCGTTCTGCACAGCAGATCTGGCCCAAGGACAAGGCCGCCACGCTCAAGT
CGGACGACTTGCTTATCTTGGCACCGGCATTCACGCTCAGCGAATTGACCGAAGCCTTCCGCATTGGGTTTCTGTTGTAT
CTGGTGTTTATCGTCATCGACCTGGTGGTGGCCAACGCGCTGATGGCGATGGGCCTTTCGCAGGTCACACCGACCAATGT
GGCGATCCCGTTCAAGCTGCTGCTGTTTGTCGCTATGGACGGCTGGTCGATCCTGATTCATGGCCTGGTTCTGAGCTATC
GGTGA

Protein sequence : 
MQMPDVGSLLLVVIMLGLLPFAALVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQNY
GAGSDNSRIVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKSDDLLILAPAFTLSELTEAFRIGFLLY
LVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVAMDGWSILIHGLVLSYR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 8e-89 99
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 1e-88 99
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 1e-88 99
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 9e-88 99
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 6e-87 98
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-87 98
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 8e-87 95
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 8e-87 95
lscR AAO18040.1 LscR Virulence TTSS locus Protein 3e-44 49
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-37 46
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 4e-33 44
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 4e-33 44
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 4e-33 44
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 9e-30 44
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 2e-29 44
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 2e-29 44
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 7e-30 44
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 9e-30 44
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 9e-30 44
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 8e-35 43
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 8e-35 43
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-33 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 7e-35 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 3e-35 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 3e-35 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 2e-35 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 7e-35 42
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 7e-32 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 9e-35 42
escR CAI43889.1 EscR protein Virulence LEE Protein 9e-35 42
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 1e-34 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 1e-34 42
escR AAC31528.1 L0049 Virulence LEE Protein 1e-34 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 1e-34 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 1e-34 42
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 1e-34 42
escR AAK26700.1 EscR Virulence LEE Protein 9e-35 42
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 1e-34 42
escR AAL57527.1 EscR Virulence LEE Protein 9e-35 42
escR AAC38369.1 EscR Virulence LEE Protein 8e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hrcR YP_005630680.1 type III secretion protein HrcR VFG0188 Protein 4e-48 53
hrcR YP_005630680.1 type III secretion protein HrcR VFG0394 Protein 8e-44 52
hrcR YP_005630680.1 type III secretion protein HrcR VFG0044 Protein 4e-45 47
hrcR YP_005630680.1 type III secretion protein HrcR VFG0519 Protein 9e-36 42
hrcR YP_005630680.1 type III secretion protein HrcR VFG0827 Protein 5e-35 42
hrcR YP_005630680.1 type III secretion protein HrcR VFG2494 Protein 7e-33 42
hrcR YP_005630680.1 type III secretion protein HrcR VFG1012 Protein 4e-33 41
hrcR YP_005630680.1 type III secretion protein HrcR VFG0715 Protein 4e-34 41
hrcR YP_005630680.1 type III secretion protein HrcR VFG2338 Protein 8e-32 41