Gene Information

Name : XOC_4103 (XOC_4103)
Accession : YP_005630350.1
Strain : Xanthomonas oryzae BLS256
Genome accession: NC_017267
Putative virulence/resistance : Virulence
Product : helix-turn-helix- domain containing protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4254787 - 4254987 bp
Length : 201 bp
Strand : +
Note : -

DNA sequence :
ATGAACAGCCGCGTGCGCGAATTGCGCGAGGCCAGTGGCTGGTCGCAAGGCGAGTTGGGCGAACGGCTGGGTGTATCGCG
GCAGACGATCAATGCGCTGGAAACCGGTAAATACGATCCCAGCCTGCCGTTGGCGTTTCGGATCGCACGTTTGTTTGGGG
AGTCGATCGAGCATGTTTTTCTTTACGAAGACGCGCAGTAG

Protein sequence :
MNSRVRELREASGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVFLYEDAQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SH2314 YP_254229.1 hypothetical protein Not tested ¥ðSh1 Protein 2e-11 50
EF0524 NP_814301.1 Cro/CI family transcriptional regulator Not tested Not named Protein 4e-06 45
ef0042 AAM75247.1 EF0042 Virulence Not named Protein 3e-06 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XOC_4103 YP_005630350.1 helix-turn-helix- domain containing protein VFG2168 Protein 1e-06 45
XOC_4103 YP_005630350.1 helix-turn-helix- domain containing protein VFG2175 Protein 1e-06 45