Gene Information

Name : dnaB (XOC_2997)
Accession : YP_005629264.1
Strain : Xanthomonas oryzae BLS256
Genome accession: NC_017267
Putative virulence/resistance : Unknown
Product : replicative DNA helicase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3059457 - 3060887 bp
Length : 1431 bp
Strand : -
Note : -

DNA sequence :
ATGTCCGCTCGTCCTGGTTTCCGTTCCAAGCGCAATCGCGATCGCGACGACGACGATTACGATCGTCCCGAGCCGCGTCT
GGACCAGCTGCGGGTGCCGCCGCATTCGGTCGAGGCCGAGCAGGCTGTGCTGGGTGGCTTGATGCTGGCGCCGGACGCGT
TCGACCGGGTCAACGATCAGCTCACCGAAAACGACTTCTACCGACGCGATCATCGGCTGATCTACCGCGCGATTCGCGAA
TTGAACGAAAAAGATCGCCCATTCGACGCAGTGACCCTGGGCGAATGGTTCGAATCGCAGGGCAAGCTGGAGCAGGTGGG
CGATGGCGCCTACCTGATCGAGCTGGCCAGCACCACGCCGTCGGCAGCCAACATCGCCGCGTATGCGGAAATCGTGCGCG
ACAAGGCGGTGCTGCGGCAGTTGATCGATGTGGGCACCACGATCGTCAACGATGGCTTCCAGCCAGAGGGCCGCGACAGC
ATCGAGTTGCTGTCCTCTGCGGAAAAGGCCGTGTTCAAGATCGCCGAAGCCGGCGCGCGCGGGCGGGCCGATTTCGTGGC
GATGCCCGGCGCCTTGAAGGATGCCTTCGAAGAGCTGCGCAACCGTTTCGAAAACGGCGGCAACATCACCGGCCTGCCGA
CCGGCTATAACGATTTCGATGCGATGACGGCCGGCCTGCAGCCGACCGACCTGATCATCCTGGCCGCGCGTCCGGCCATG
GGCAAGACCACCTTCGCGCTGAACATTGCCGAATACGCCGCGATCAAGTCCAAGAAGGGCGTGGCGGTGTTTTCGATGGA
AATGTCGGCCTCGCAGTTGGCGATGCGCCTGATCTCCTCCAACGGCCGCATCAATGCGCAGCGTCTGCGGACTGGTGCGC
TGGAAGACGAGGATTGGGCACGCGTGACCGGTGCGATCAAGATGCTGAAAGAAACCAAGATCTTTATCGACGACACCCCG
GGCGTGTCGCCGGAAGTGCTGCGTTCCAAGTGCCGCCGCCTCAAGCGCGAACACGATCTGGGCTTGATCGTCATCGACTA
CCTGCAGCTGATGTCGGTGCCCGGCAACAGCGAAAACCGCGCGACCGAAATTTCGGAAATTTCGCGTGGTCTGAAGGGGC
TTGCGAAGGAACTCAACGTGCCGGTGATCGCGTTGTCGCAGCTCAACCGCTCGCTGGAAACGCGGACCGACAAGCGCCCG
GTGATGGCCGACTTGCGCGAATCCGGCGCAATCGAGCAGGACGCGGACATGATCGTCTTCATCTACCGCGACGATTACTA
CAACAAGGAAAATTCGCCGGACAAGGGCCTGGCCGAGATCATCATCGGCAAGCACCGCGGCGGCCCGACCGGCTCGTGCA
AGCTCAAGTTCTTCGGTGAGTACACCCGCTTCGACAATCTGGCGCACGACTCGGTGGGCAGTTTCGAGTAA

Protein sequence :
MSARPGFRSKRNRDRDDDDYDRPEPRLDQLRVPPHSVEAEQAVLGGLMLAPDAFDRVNDQLTENDFYRRDHRLIYRAIRE
LNEKDRPFDAVTLGEWFESQGKLEQVGDGAYLIELASTTPSAANIAAYAEIVRDKAVLRQLIDVGTTIVNDGFQPEGRDS
IELLSSAEKAVFKIAEAGARGRADFVAMPGALKDAFEELRNRFENGGNITGLPTGYNDFDAMTAGLQPTDLIILAARPAM
GKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISSNGRINAQRLRTGALEDEDWARVTGAIKMLKETKIFIDDTP
GVSPEVLRSKCRRLKREHDLGLIVIDYLQLMSVPGNSENRATEISEISRGLKGLAKELNVPVIALSQLNRSLETRTDKRP
VMADLRESGAIEQDADMIVFIYRDDYYNKENSPDKGLAEIIIGKHRGGPTGSCKLKFFGEYTRFDNLAHDSVGSFE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 4e-96 50
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 9e-88 47
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 3e-87 47
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 4e-80 46
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 4e-85 46
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 1e-82 45
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 3e-76 45
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 3e-76 45
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 1e-67 42