Gene Information

Name : ntrC (XOC_0297)
Accession : YP_005626703.1
Strain : Xanthomonas oryzae BLS256
Genome accession: NC_017267
Putative virulence/resistance : Virulence
Product : two-component system response regulator protein ntrC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 294268 - 295695 bp
Length : 1428 bp
Strand : +
Note : -

DNA sequence : 
ATGGCTGAGGCCGCCGCCGTATCCCACATCTGGGTTGTCGACGACGACCGGTCGGTCCGGTTCGTGCTGTCCACCGCCTT
GCGCGATGCCGGTTACGCGGTGGATGGTTTCGACAGCGCTGCCGCCGCGCTGCAGGCGCTCGCTATGCGGCCCACGCCGG
ACCTGCTGTTCACCGACGTGCGCATGCCCGGCGAAGACGGCCTGACCCTGCTCGACAAGCTCAAAGCCAAACACCCGCAA
CTGCCGGTGATCGTGATGTCGGCCTATACCGACGTTGCCAGCACCGCCGGCGCCTTCCGCGGCGGCGCGCATGAGTTCCT
GTCCAAGCCCTTCGACCTGGACGATGCGGTGGCGCTGGCTGCACGCGCGCTGCCGGATGCCGATGCGGGTGCCGACGAAA
TCTTCGCCACCCGGCTGGCCGAAGGCTCGGCCTCGTTGATCGGCGACACGCCCGCGATGCAGGCTTTGTTTCGCGCGATC
GGACGTCTGGCGCAGGCACCGCTGTCGGTCTTGATCAACGGCGAAACCGGCACCGGTAAGGAGCTGGTCGCCCGCGCGCT
GCACAACGAATCGCCGCGCGCGCGCAAACCCTTCGTCGCGCTCAATACCGCCGCCATTCCGGCCGAATTGCTGGAAAGCG
AGTTGTTCGGCCACGAAACCGGTGCCTTTACCGGCGCGACCAAACGGCATATCGGCCGTTTCGAACAAGCCGATGGCGGC
ACGCTGTTTCTGGACGAAATCGGCGACATGCCGTTGCCGCTGCAGACACGCCTGTTGCGCGTGCTGGCAGAGAACGAATT
CTTCCGCGTCGGTGGGCGCGAATTGATCCGCGTCGATGTGCGTGTGATCGCCGCGACCCACCAGGACCTGGAAGCCTTGG
TCGAACAAGGCCGCTTCCGCGCCGATTTGCTACATCGCCTGGATGTGGTGCGCCTGCAATTGCCGCCGCTGCGCGAACGC
CGTGGCGACATCGCGCAACTGGCCGAGAACTTCCTGACCATGGCCGGGCGCAAGCTCGACATGCTGCCCAAGCGGCTGTC
GTCGGCCGCGTTGGAAGACCTGCGTCAATACGACTGGCCCGGCAACGTCCGCGAACTGGAAAACGTGTGCTGGCGTCTGG
CCGCGCTGGCCACCGCCGACATCATCGACGTGGTGGATGTGGAAGCCGCACTGGCACGTGGTGGACGTCGTCACCGCAGC
GGCCGCAGCGACGGCCAGTGGGACGACATGCTCTCCAGCTGGGCCGCACAACGCCTGAGCGAAGGCGCCCAGGGCCTGCA
CGCCGAAGCGCGCGAACGCCTGGACAAAACCCTGCTCGAAGCCGCACTGCAACTCACCCAGGGCCGCCGCGCCGAAGCTG
CCGCCCGCCTGGGCCTGGGCCGTAACACCGTCACCCGCAAACTCGGTCCGGGGCGCAAACCCCGCTAA

Protein sequence : 
MAEAAAVSHIWVVDDDRSVRFVLSTALRDAGYAVDGFDSAAAALQALAMRPTPDLLFTDVRMPGEDGLTLLDKLKAKHPQ
LPVIVMSAYTDVASTAGAFRGGAHEFLSKPFDLDDAVALAARALPDADAGADEIFATRLAEGSASLIGDTPAMQALFRAI
GRLAQAPLSVLINGETGTGKELVARALHNESPRARKPFVALNTAAIPAELLESELFGHETGAFTGATKRHIGRFEQADGG
TLFLDEIGDMPLPLQTRLLRVLAENEFFRVGGRELIRVDVRVIAATHQDLEALVEQGRFRADLLHRLDVVRLQLPPLRER
RGDIAQLAENFLTMAGRKLDMLPKRLSSAALEDLRQYDWPGNVRELENVCWRLAALATADIIDVVDVEAALARGGRRHRS
GRSDGQWDDMLSSWAAQRLSEGAQGLHAEARERLDKTLLEAALQLTQGRRAEAAARLGLGRNTVTRKLGPGRKPR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 5e-49 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 5e-49 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ntrC YP_005626703.1 two-component system response regulator protein ntrC BAC0467 Protein 2e-68 46
ntrC YP_005626703.1 two-component system response regulator protein ntrC BAC0089 Protein 2e-63 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ntrC YP_005626703.1 two-component system response regulator protein ntrC VFG1249 Protein 6e-61 45
ntrC YP_005626703.1 two-component system response regulator protein ntrC VFG0116 Protein 7e-59 43