Gene Information

Name : XOC_2537 (XOC_2537)
Accession : YP_005628823.1
Strain : Xanthomonas oryzae BLS256
Genome accession: NC_017267
Putative virulence/resistance : Virulence
Product : chaperone ClpB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2580934 - 2583639 bp
Length : 2706 bp
Strand : -
Note : -

DNA sequence :
ATGGCAGACATCAGTCGCGCCGCCTTGTTCGGCAAGCTCAACAAGACCACCTATCGCGGTATCGAATCGGCCACTGCGTT
CTGCAGGCTACGTGGCGACCGCGAAGTGGAACTGCTGCACTGGCTGCATCAGTTGCTGCAGGCGCAAGACGGCGACTTGC
ACCGCATCGTGCGCCGTTTTTCGCTGGATGCGTCGCGGCTTGCACAGGACCTGACCGTGGCGCTCGATCGCCTGCCGCGC
GGCGGTGGCGGACACTTCGATCTGTCGGCCAGCGTGGAGGAGGCAGTGGAACGCGCCTGGGTGCACTGCACGTTGCGTTA
CGGGCGGCAACGCATCCGTGGCGGCGATCTGCTGGTGGCGATCCTGCATACGCGCAGCCTGCGTCACGGGTTGCTGGCGA
TGTCGAGCGAGTTCGCCAAGCTGCGCGCGGAAGCACTGGCGGACGATCTGGATGACATCGTCGCCGGCTCGCCGGAAGAC
GATGCCACCGACGTTGCGGCGGCTGTCGCCCCCGTTGGGACTGGCGCAGCAGGTGGTACTGCCGCGCTCGCGCTGTATAC
GGTCGATCTCACCGCGCAGGCACGCGAGGGCAAGCTGGACCCGATCATCGGCCGCGACGACGAGATTCGCCAGGTCGTCG
ATATCCTGATGCGGCGCCGCCAGAACAACCCGATCCTGGTTGGCGAGGCCGGTGTCGGCAAGACCGCGGTGGTGGAAGGC
TTCGCACAACGTATCGCGCGCGGCGATGTGCCGCCCGCGTTGCAGGATGTGCAGCTGCGCACGCTGGATGTCGGCTTGCT
GCAAGCCGGCGCCAGCATGAAAGGTGAGTTCGAGCAGCGCCTGCGCGCAGTCATCGACGAAGTGCAGGCCAGCCCCAAGC
CGATCATTCTGTTCGTGGATGAAACCCACACCCTGGTCGGCGCCGGTGGCGCGGCCGGTACCGGCGATGCGGCCAACCTG
CTCAAGCCCGCACTGGCGCGCGGCACCTTGCGCACCGTGGGTGCCACCACGTTTGCCGAGTACAAGAAGTACATCGAAAA
AGACCCCGCACTGACACGACGCTTCCAGGCCGTGCAGGTCGACGAACCGGACGAGGCCAAGGCGGTGCGCATGATGCGCG
GTGTCGCCTCGACGATGGAACAGCACCACCGCGTACAGATTCTGGACGAGGCGCTGGAAGCGGCGGTCAAGCTCAGTCAC
CGCTATATCCCGGCGCGCCAGCTGCCAGACAAATCGGTCAGTCTGCTCGATACCGCCTGCGCGCGCGTCGCGGTGAGCCT
GCATGCCACGCCTGCGGAAGTGGACGACAGCCGTCGCCGCATCGAATCGCTGGACACCGAGCACGCCATCATCGAGCGCG
AGCGTGCGATTGGCATCGTGGTCGATGAGCGTGCTGCCGCTTGCGCCAGCCTGCTGCAAAGCGAGCACGGCCGCCTGCGC
GAGCTGGAACAGCGCTGGGTTGCCGAAAAGGCGTTGGTCGATGCGCTGTTGTCGCTACGCGCGCAACTGCGAGGCGGCAA
CGCGCCGGTGGAAGGGACCGGCAGTGCGTTGGAAACGGAGGCCGAACAGCGTGCGTCTGGCGATATCGCGGTGCTCGAAA
CGCCGGTACACGTGGATCGCGATGCGCTCTTAGCACGTTTGCAGTTGGTACAAGCCGAACTGGCCGCATTGCAGGGCGAA
TCGCCGCTGATCCTGCCCACCGTCGATTACCAAGCCGTGGCCGCGGTGGTCGCCGACTGGACCGGCATCCCGGTCGGGCG
CATGGCCCGCAACGAGATCGACACCGTGCTGCGCTTGCCCGAACTGCTGGCCAAGCGCGTGATCGGCCAGGACCACGCCA
TGGAGATGATCGCCAAGCGGATCCAGACCAGCCGCGCCGGCCTGGACAACCCGGACAAACCGATCGGCGTGTTCCTGCTG
GCCGGAACCTCCGGCGTGGGCAAGACCGAAACCGCACTCGCCCTGGCCGAAACGCTGTACGGCGGCGAGCAAAACCTGAT
CACCATCAACATGAGCGAGTACCAAGAGGCGCACACCGTCTCCTCGCTCAAGGGCGCACCGCCGGGCTATGTGGGCTACG
GCGAAGGTGGCGTACTGACCGAAGCGGTGCGACGCAAGCCGTACGCGGTCGTGCTGCTGGACGAAGTGGAAAAAGCCCAC
CCGGACGTGCACGAACTGTTCTTCCAGGTCTTCGACAAGGGCTGGATGGAAGACGGCGAAGGCCGCCGCATCGACTTCCG
CAACACCTTGATCATCCTTACCAGCAACGCCGGCACCGACCTGATCGCCAGCCTGTGCAAGGACCCGGAATTGATGCCGG
ATCCGGACGGCATGGCCAAGGCATTGCGCGAACCGTTGTTGAAGGTGTTTCCGCCGGCATTGCTCGGGCGGCTGGTGGCG
ATTCCGTATTACCCGCTCAGTAACGCCATGCTCGGACAGATCGTGCGATTGCAGTTGAACCGCATCAAGCAGCGGATCGA
AGAGCGCTACAGGATTCCGTTCGACTACGACGAGTCTGTAGTGGAGCTGGTGGTGAGCCGGTGTACCGAGAGCGAATCGG
GTGGCCGGATGATCGATGCGATTTTGACTAACTCGATGTTGCCGGAGATTAGCCGCAAATTTCTTCGTGGGGTAGTGGAC
CGGAAACGGACTGAACGCCTTGACATTCGTGTCGAAGATTCCGCATTGGTTTATTCGTTTCTCTGA

Protein sequence :
MADISRAALFGKLNKTTYRGIESATAFCRLRGDREVELLHWLHQLLQAQDGDLHRIVRRFSLDASRLAQDLTVALDRLPR
GGGGHFDLSASVEEAVERAWVHCTLRYGRQRIRGGDLLVAILHTRSLRHGLLAMSSEFAKLRAEALADDLDDIVAGSPED
DATDVAAAVAPVGTGAAGGTAALALYTVDLTAQAREGKLDPIIGRDDEIRQVVDILMRRRQNNPILVGEAGVGKTAVVEG
FAQRIARGDVPPALQDVQLRTLDVGLLQAGASMKGEFEQRLRAVIDEVQASPKPIILFVDETHTLVGAGGAAGTGDAANL
LKPALARGTLRTVGATTFAEYKKYIEKDPALTRRFQAVQVDEPDEAKAVRMMRGVASTMEQHHRVQILDEALEAAVKLSH
RYIPARQLPDKSVSLLDTACARVAVSLHATPAEVDDSRRRIESLDTEHAIIERERAIGIVVDERAAACASLLQSEHGRLR
ELEQRWVAEKALVDALLSLRAQLRGGNAPVEGTGSALETEAEQRASGDIAVLETPVHVDRDALLARLQLVQAELAALQGE
SPLILPTVDYQAVAAVVADWTGIPVGRMARNEIDTVLRLPELLAKRVIGQDHAMEMIAKRIQTSRAGLDNPDKPIGVFLL
AGTSGVGKTETALALAETLYGGEQNLITINMSEYQEAHTVSSLKGAPPGYVGYGEGGVLTEAVRRKPYAVVLLDEVEKAH
PDVHELFFQVFDKGWMEDGEGRRIDFRNTLIILTSNAGTDLIASLCKDPELMPDPDGMAKALREPLLKVFPPALLGRLVA
IPYYPLSNAMLGQIVRLQLNRIKQRIEERYRIPFDYDESVVELVVSRCTESESGGRMIDAILTNSMLPEISRKFLRGVVD
RKRTERLDIRVEDSALVYSFL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 0.0 51
aec27 YP_851418.1 ATPase Not tested PAI II APEC-O1 Protein 1e-124 48
aec27 AAQ96721.1 Aec27 Not tested AGI-1 Protein 1e-124 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XOC_2537 YP_005628823.1 chaperone ClpB VFG2076 Protein 0.0 70
XOC_2537 YP_005628823.1 chaperone ClpB VFG2084 Protein 1e-132 42