Gene Information

Name : XOC_1421 (XOC_1421)
Accession : YP_005627770.1
Strain : Xanthomonas oryzae BLS256
Genome accession: NC_017267
Putative virulence/resistance : Virulence
Product : amino acid transporter
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1408061 - 1409443 bp
Length : 1383 bp
Strand : -
Note : -

DNA sequence : 
ATGACCGACACACCACGCCGCGACGATGCGGCCACGCTGGAACGCTTCGGCTACGCACAAGAGCTCAAGCGGCAGCTCAC
GCTCAAGGATCTGTTGATCTACGGGCTGGTGTCCATGGTGCCGACGGCACCGTTCTCGATCTTCGGCGGCGTCTTCGACA
TCAGCGCCGGAATGGTGCCGCTGACCTATCTGGTCGGCTTCATGGCGATGCTGTTCACCGCGCTGAGCTACCAGCAGATG
TCGCAGGCATTTCCGGTGGCTGGCTCGGTGTATGCCTACGTCGGGCGCGGGCTGAACAGCGGCATGGGCTTTCTGGCTGG
TTGGGCGATTCTGCTCGACTATCTGCTGGTACCGACGCTGCTGTATGTGGTCGGCGCCAACGCGATGTACAACGTGGTGC
CGGCAGTGCCGCAGCCGGTGTGGATCGGGTTCTTCGTCGTGCTCAACACGGTGGTCAACCTACGCGGTATCGAAACCACC
GCACGTGCCAATCGCTTTTTTCTGCTTGGGCAGTTGCTGGTATTGGCGGTATTCGTGGTGCTGGCCACGTTGGCGATCCA
GCGCGGCGTCAATGGCGCGCACTGGAGTTGGCGCCCCATCTATGACCCGCAAGCGTTTTCCCCACACGTGATCTTCAGCG
CATTGTCGGTGGCGGTGGTGTCGTTCCTCGGCTTCGATGCGATCTCCACCTTGTCCGAAGAGGCGCGCGGCGGCAACCGT
GTGGTGGGGCGTGCCACCTTGCTCGCGTTGCTGATCGTGGCAGGCGTATTCGTCCTGCAAACCTGGCTGGCGGCATTGCT
GCAACCCACCCTGCAGCGCTACCCCAGTGCGCAAGCATCCAACGATGCGTTCTTCGAGATCGGGCGATTGATCGCCGGGC
CATGGCTGCAGATCGTCATTGCGCTCACGGTCGCCATCAGCGCGGCAATTGCCAATTCGCTGGTGGCACAAGCGGCCACA
TCGCGCCTGTTGTTCGCCATGGCGCGCGACCGCCAGTTGCCGGCCTTCCTGCGCTACATCCACCCGCGTACCGGCGTGCC
GCAGCGTGCGATCTTGCTGGTGGCGGGGCTAAGCATCGTGCTGGGCGAAGTCTTCGTCGGCCAGATTGCGCTGCTGTCGT
CGCTGTGCAACGTCGGCGCACTGACTGCCTTCGTGCTGCTGCATATCGCAGTGCTATGGCACTTCCGCGCCCAGGGCCGG
CGCGTGCTGCATGGCCTGGCGCCGTTGATCGGCATCGTCATCCTCGCCTACGTATTACTCAATGCCGACACGCACGCGCA
ACTGGGTGGCACCGCGTGGATGGTGGTGGGACTGACGGTACTGGCGTTTCTGAAACTCAGCGGACGTTCTACCGAATTTC
GCGCCAGCGACGCAGTGGAATAG

Protein sequence : 
MTDTPRRDDAATLERFGYAQELKRQLTLKDLLIYGLVSMVPTAPFSIFGGVFDISAGMVPLTYLVGFMAMLFTALSYQQM
SQAFPVAGSVYAYVGRGLNSGMGFLAGWAILLDYLLVPTLLYVVGANAMYNVVPAVPQPVWIGFFVVLNTVVNLRGIETT
ARANRFFLLGQLLVLAVFVVLATLAIQRGVNGAHWSWRPIYDPQAFSPHVIFSALSVAVVSFLGFDAISTLSEEARGGNR
VVGRATLLALLIVAGVFVLQTWLAALLQPTLQRYPSAQASNDAFFEIGRLIAGPWLQIVIALTVAISAAIANSLVAQAAT
SRLLFAMARDRQLPAFLRYIHPRTGVPQRAILLVAGLSIVLGEVFVGQIALLSSLCNVGALTAFVLLHIAVLWHFRAQGR
RVLHGLAPLIGIVILAYVLLNADTHAQLGGTAWMVVGLTVLAFLKLSGRSTEFRASDAVE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY1743 NP_456146.1 putative amino acid permease Not tested SPI-2 Protein 6e-64 43
t1247 NP_805052.1 amino acid permease Not tested SPI-2 Protein 6e-64 43
ycjj YP_216387.1 amino acid permease Not tested SPI-2 Protein 3e-63 42
orf48 NP_460344.1 amino acid permease Not tested SPI-2 Protein 3e-63 42
ORF48 CAA68204.1 amino acid permease YeeF like protein Not tested SPI-2 Protein 4e-60 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XOC_1421 YP_005627770.1 amino acid transporter VFG0480 Protein 1e-63 42