Gene Information

Name : XOC_1071 (XOC_1071)
Accession : YP_005627439.1
Strain : Xanthomonas oryzae BLS256
Genome accession: NC_017267
Putative virulence/resistance : Unknown
Product : ISXoc2 transposase, IS3 family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1050117 - 1050443 bp
Length : 327 bp
Strand : -
Note : -

DNA sequence :
GTGATGACCAAGCCAGTGAAGTATTCCCCGGAAGTCCGGGAGCGCGCGGTGCGGATGGTGCTGGAGCACCAGGACACGCA
CAGTTCGCAGTGGGCGGCGATCGAGTCGATTGCCGGGAAGATCGGGTGCACAGCCCAGACGCTGCGCAACTGGGTACGTC
GTGCCGAGCGTGACCAGGGGCTGCGTCCTGGCTTGACGACGGACGAGCGGGTGCGGATGAAGGCACTGGAGCGGGAGGTG
CGCGAGCTGCGGCAGGCCAACGAGATCCTGCGCAAGGCGTCGGCGTATTTCGCCCAGGCGGAGCTCGACCGCCGCTTCAA
ACCATGA

Protein sequence :
MMTKPVKYSPEVRERAVRMVLEHQDTHSSQWAAIESIAGKIGCTAQTLRNWVRRAERDQGLRPGLTTDERVRMKALEREV
RELRQANEILRKASAYFAQAELDRRFKP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
IS629 CAC37925.1 hypothetical protein Not tested LEE Protein 2e-27 69
IS629 CAI43820.1 hypothetical protein Not tested LEE Protein 2e-27 69
IS629 CAI43841.1 hypothetical protein Not tested LEE Protein 2e-27 69
IS629 CAI43908.1 hypothetical protein 1 Not tested LEE Protein 2e-27 69
Z1199 NP_286734.1 hypothetical protein Not tested TAI Protein 5e-27 69
Z1222 NP_286757.1 hypothetical protein Not tested TAI Protein 5e-27 69
Z1639 NP_287142.1 hypothetical protein Not tested TAI Protein 5e-27 69
Z1661 NP_287163.1 hypothetical protein Not tested TAI Protein 5e-27 69
ECO103_3584 YP_003223442.1 IS629 transposase OrfA Not tested LEE Protein 3e-27 69
ECO111_3720 YP_003236060.1 putative IS629 transposase OrfA Not tested LEE Protein 6e-26 68
ECO111_3775 YP_003236110.1 putative IS629 transposase OrfA Not tested LEE Protein 6e-26 68
Z4335 NP_289560.1 hypothetical protein Not tested OI-122 Protein 6e-26 68
unnamed CAD42084.1 hypothetical protein Not tested PAI II 536 Protein 6e-23 67
unnamed AAF09023.1 unknown Not tested SHI-O Protein 8e-24 67
c5168 NP_757016.1 hypothetical protein Not tested PAI II CFT073 Protein 1e-23 67
tnpE AAD44738.1 TnpE Not tested SHI-2 Protein 8e-24 67
c5214 NP_757062.1 hypothetical protein Not tested PAI II CFT073 Protein 1e-23 67
unnamed AAL67399.1 TnpE-like protein Not tested PAI II CFT073 Protein 8e-24 67
S3184 NP_838467.1 IS629 orfA Not tested SHI-1 Protein 1e-23 67
unnamed ADD91740.1 hypothetical protein Not tested PAI-I AL862 Protein 8e-24 67
SF2979 NP_708753.1 IS629 ORF1 Not tested SHI-1 Protein 1e-23 67
ORF_36 AAZ04445.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 6e-22 66
c5177 NP_757025.1 hypothetical protein Not tested PAI II CFT073 Protein 5e-22 66
r13 AAC61722.1 R13 Not tested PAI I CFT073 Protein 3e-22 66
ECUMN_3344 YP_002414020.1 transposase ORF A, IS629 Not tested Not named Protein 5e-22 66
unnamed AAL67404.1 R13-like protein Not tested PAI II CFT073 Protein 3e-22 66
S4062 NP_839231.1 IS629 orfA Not tested SHI-2 Protein 4e-22 66
SF3706 NP_709445.1 IS629 ORF1 Not tested SHI-2 Protein 9e-23 66
APECO1_3498 YP_854313.1 transposase; OrfA protein of insertion sequence IS629 Not tested PAI I APEC-O1 Protein 8e-22 66
c3596 NP_755471.1 hypothetical protein Not tested PAI I CFT073 Protein 5e-22 66

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XOC_1071 YP_005627439.1 ISXoc2 transposase, IS3 family VFG0643 Protein 3e-24 67
XOC_1071 YP_005627439.1 ISXoc2 transposase, IS3 family VFG1603 Protein 2e-23 67
XOC_1071 YP_005627439.1 ISXoc2 transposase, IS3 family VFG0606 Protein 3e-23 66
XOC_1071 YP_005627439.1 ISXoc2 transposase, IS3 family VFG1717 Protein 1e-22 66