Gene Information

Name : XOC_1070 (XOC_1070)
Accession : YP_005627438.1
Strain : Xanthomonas oryzae BLS256
Genome accession: NC_017267
Putative virulence/resistance : Unknown
Product : ISXoc2 transposase, IS3 family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1049224 - 1050120 bp
Length : 897 bp
Strand : -
Note : -

DNA sequence :
ATGACCGGGTTCGTCGCAGAGCATCGCGATGCCCACGGAGTCGAGCCGATCTGCCGGGTTCTGGAGATCGCTCCGTCGAC
GTACTACAGCCACGCGGCCCGGGAGGCGCATCCGCAGGCGCGTGCGGACCGCTGGTGGCGAGATCAAGCACTGCAGGCGC
AGGTTCGCCGGGTGTGGGACGAGAACCGCCAGGTCTACGGCGTGCGCAAGGTCTGGAAGCAGTTGCTGCGTGAAGGCTGG
CAGGTGGCGCGATGCACGGTGGAGCGGTTGATGCGCCGGCTGGGCCTGCGGGGCGTCATCCGCGGCAAGGTGGTGAAGAC
CACGCACAGCGACAATGCGCAGCCGTGCCAGCTGGACCGGGTGAATCGGCAGTTCCAGGCAGAGCGAGCGAATGCACTGT
GGGTGAGCGACTTCACCGACGTCTCGACCTGGCAGGGCATGGTGTACGTGGCGTTTGTGATCGATGTGTACGCGCGGCGG
ATCGTGGGCTGGAAGGCCTCCACATCGATGACGACGGACGTTGTGCTCGATGCCTTGGAGCAGGCCCTGCACGCCCGACA
GAGGGATGGGGAGCTGATCCACCACTCCTACAGGGGATCGCAGTACGTGAGTATCCGCTACAGCGAACGGCTGGCCGAGG
CCGGGGTCGAGCCGTCGGTGGGCAGCGTGGGCGACAGCTACGACAATGCGCTGGCCGAGACGATCAGCGGACTGTACAAG
GCCGAGGTCATCCACCGCAGATCGTGGCGCACTCGTGAGCAGGTGGAACTGGCCACCCTGGACTGGGTGCACTGGTACAA
CCATAAGCGACTGCTGGGGCCGATCGGGCACATCCCGCCAGCGGAAGCCGAAGCGGCTTACTATCGGCAACAAACCGGTC
AGGCCGAGGCGGCCTGA

Protein sequence :
MTGFVAEHRDAHGVEPICRVLEIAPSTYYSHAAREAHPQARADRWWRDQALQAQVRRVWDENRQVYGVRKVWKQLLREGW
QVARCTVERLMRRLGLRGVIRGKVVKTTHSDNAQPCQLDRVNRQFQAERANALWVSDFTDVSTWQGMVYVAFVIDVYARR
IVGWKASTSMTTDVVLDALEQALHARQRDGELIHHSYRGSQYVSIRYSERLAEAGVEPSVGSVGDSYDNALAETISGLYK
AEVIHRRSWRTREQVELATLDWVHWYNHKRLLGPIGHIPPAEAEAAYYRQQTGQAEAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 5e-69 67
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 1e-77 64
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 1e-77 64
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 2e-77 64
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 8e-79 63
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 1e-78 63
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 1e-78 63
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 4e-76 63
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 4e-76 63
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 4e-76 63
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 1e-76 63
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 2e-76 63
Z1198 NP_286733.1 transposase Not tested TAI Protein 4e-77 63
Z1638 NP_287141.1 transposase Not tested TAI Protein 4e-77 63
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-77 63
Z1221 NP_286756.1 transposase Not tested TAI Protein 1e-77 63
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 1e-77 62
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 3e-75 61
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 4e-51 59
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 1e-52 46
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 2e-39 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XOC_1070 YP_005627438.1 ISXoc2 transposase, IS3 family VFG1602 Protein 2e-75 61