Gene Information

Name : YPC_4080 (YPC_4080)
Accession : YP_005625791.1
Strain : Yersinia pestis Harbin 35
Genome accession: NC_017265
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3948560 - 3949342 bp
Length : 783 bp
Strand : -
Note : -

DNA sequence :
GTGATGATGGAACTGCAACATCAACGACTGATGGCGCTCGCCGGGCAGTTGCAACTGGAAAGCCTTATAAGCGCAGCGCC
TGCGCTGTCACAACAGGCAGTAGACCAGGAATGGAGTTATATGGACTTCCTGGAGCATCTGCTTCATGAAGAAAAACTGG
CACGTCATCAACGTAAACAGGCGATGTATACCCGAATGGCAGCCTTCCCGGCGGTGAAAACGTTCGAAGAGTATGACTTC
ACATTCGCCACCGGAGCACCGCAGAAGCAACTCCAGTCGTTACGCTCACTCAGCTTCATAGAACGTAATGAAAATATCGT
ATTACTGGGGCCATCAGGTGTGGGGAAAACCCATCTGGCAATAGCGATGGGCTATGAAGCAGTCCGTGCAGGTATCAAAG
TTCTCTTCACAACAGCAGCAGATCTGTTACTTCAGTTATCTACGGCACAACGTCAGGGCCGTTATAAAACGACGCTTCAG
CGTGGAGTAATGGCCCCCCGCCTGCTCATCATTGATGAAATAGGCTATCTGCCGTTCAGTCAGGAAGAAGCAAAGCTGTT
CTTCCAGGTCATCGCTAAACGTTACGAAAAGAGCGCAATGATCCTGACATCCAATCTGCCGTTCGGGCAGTGGGATCAAA
CGTTCGCCGGTGATGCAGCACTGACCTCAGCGATGCTGGACCGTATCTTACACCACTCACATGTCGTTCAAATCAAAGGA
GAAAGCTATCGACTCAGACAGAAACGAAAGGCCGGGGTTATAGCAGAAGCTAATCCTGAGTAA

Protein sequence :
MMMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDF
TFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVLFTTAADLLLQLSTAQRQGRYKTTLQ
RGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKG
ESYRLRQKRKAGVIAEANPE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAB46598.1 IS100 transposase Not tested HPI Protein 2e-119 99
s0036 CAD33774.1 ORF B protein Not tested PAI I 536 Protein 2e-119 99
y1093 CAD42087.1 OrfB protein of IS100 transposase Not tested PAI II 536 Protein 2e-119 99
YPTB1586 YP_070114.1 transposase/IS protein Not tested HPI Protein 3e-119 99
orfB CAE85183.1 OrfB protein, transposase, IS100 Not tested PAI V 536 Protein 2e-119 99
unnamed CAA21402.1 - Not tested HPI Protein 3e-119 99
api84 CAF28558.1 putative transposase Not tested YAPI Protein 2e-119 99
YPO1901 YP_002346891.1 transposase/IS protein Not tested HPI Protein 6e-120 99
y1093 CAC43411.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 2e-119 99
y2410 NP_669717.1 transposase/IS protein Not tested HPI Protein 6e-120 99
aec58 AAW51741.1 Aec58 Not tested AGI-3 Protein 8e-120 99
y1093 CAD66188.1 transposase Orf B, insertion element IS100 Not tested PAI III 536 Protein 1e-118 99
y1094 CAD33719.1 ORF B protein Not tested PAI I 536 Protein 5e-85 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPC_4080 YP_005625791.1 transposase VFG1515 Protein 1e-119 99
YPC_4080 YP_005625791.1 transposase VFG1627 Protein 1e-119 99
YPC_4080 YP_005625791.1 transposase VFG1606 Protein 1e-119 99
YPC_4080 YP_005625791.1 transposase VFG1663 Protein 6e-119 99
YPC_4080 YP_005625791.1 transposase VFG1460 Protein 3e-85 99