Gene Information

Name : ribD (YPC_3469)
Accession : YP_005625228.1
Strain : Yersinia pestis Harbin 35
Genome accession: NC_017265
Putative virulence/resistance : Unknown
Product : tRNA-specific adenosine deaminase
Function : -
COG functional category : -
COG ID : -
EC number : 1.1.1.193
Position : 3336882 - 3337991 bp
Length : 1110 bp
Strand : -
Note : -

DNA sequence : 
ATGCAGCCCGATGAGTTCTATATGGCCCGAGCTTTTGAACTGGTGCGTTTGGGGCGCTTTACGACGTCGCCTAACCCCAA
TGTAGGCTGTGTCTTGGTTCGTGATGGCGAGATCGTCGGCGAAGGTTACCACTTACGTGCTGGAGAGCCGCATGCTGAAG
TGCATGCGTTACGTATGGCGGGTGAGAAAGCGCGAGGAGCCACGGCTTATGTCACTCTTGAGCCGTGTAGCCATTATGGT
CGGACGCCACCTTGTGCTGATGCGTTGGTCGCCGCAGGTGTGATACGGGTTGTTGCTGCCATGCAGGATCCTAATCCAGA
AGTTGCCGGGCGAGGGCTGTATAAATTAAAACAGGCCGGTATCGCTGTCGATCATGGCTTGATGTTAGCTGAGGCCGAGG
CTGTTAACCTTGGTTTCTTGAAGCGTATGCGGACTGGTTTCCCTTATGTGCAATTGAAAATGGCGGCATCATTGGACGGG
CGTACAGCCATGGCATCAGGTGAGAGCCAGTGGATTACCTCACCACAGGCACGCCAGGATGTGCAACGCTTTAGGGCCGA
GAGTTCAGCTATTCTCAGTACCAGTGCCACAGTATTGGCAGATGACCCTTCGCTGACGGTACGCTGGCAGGATTTAGATG
CCGAAACGCAGGTTTTGTATCCTCATGATAGTGTTCGACAGCCAGTAAAAATTATACTCGATAGCCATAACCGCGTGACT
CCACGGCATAAAGTGATACAGCAAGACGGCCCATGCTGGCTGGCTCGCGTAGATGCCGATGATCAGCCATGGCCTGGCAA
TATCGAACAACTGTTGCTACCACGTTATGGTAATGGCGTGGACTTGGTTGTGTTGATGATGCAATTGGGGAAACGGAATA
TTAACTCTGTCTGGGTAGAGGCTGGGCCACAACTGGCGGGTGCATTGTTACAAGCCGGAGTGGTGGATGAGTTAATCCTT
TATATCGCCCCCAAACTCTTGGGCAGTGATGCGCGTGGATTATGCGAGCTAGCTGGGCTGACGAATTTATCGCAAGCGCC
TGAGTTTGCATTTAGCGATGTACGGCTGGTCGGTCCGGACTTGCGTTTACGCTTGAAGCCAAAGTATTAA

Protein sequence : 
MQPDEFYMARAFELVRLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEKARGATAYVTLEPCSHYG
RTPPCADALVAAGVIRVVAAMQDPNPEVAGRGLYKLKQAGIAVDHGLMLAEAEAVNLGFLKRMRTGFPYVQLKMAASLDG
RTAMASGESQWITSPQARQDVQRFRAESSAILSTSATVLADDPSLTVRWQDLDAETQVLYPHDSVRQPVKIILDSHNRVT
PRHKVIQQDGPCWLARVDADDQPWPGNIEQLLLPRYGNGVDLVVLMMQLGKRNINSVWVEAGPQLAGALLQAGVVDELIL
YIAPKLLGSDARGLCELAGLTNLSQAPEFAFSDVRLVGPDLRLRLKPKY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00289 YP_008207754.1 Pyrimidine deaminase Not tested AbaR25 Protein 6e-59 48
BJAB0868_00293 YP_008211619.1 Pyrimidine deaminase Not tested AbaR26 Protein 6e-59 48