Gene Information

Name : YPC_1355 (YPC_1355)
Accession : YP_005623277.1
Strain : Yersinia pestis Harbin 35
Genome accession: NC_017265
Putative virulence/resistance : Virulence
Product : putative N-acetylneuraminate lyase
Function : -
COG functional category : -
COG ID : -
EC number : 4.1.3.3
Position : 1335748 - 1336641 bp
Length : 894 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAAAGTTAACCGGCCTGATCGCAGCTCCGCACACTCCCTTTGATGAACAGGGCGAGGTCAATTATCCGGTCATTGA
CCAAATTGCCGAGCATCTGATCAATGATGGTGTGAAAGGCGTTTATGTCTGTGGTACCACTGGCGAAGGCATTCATTGCT
CAGTTGATGAGCGCAAGAAAATTGCTGAACGCTGGGTAAATGCCGCTCAAGGCAAACTGAGCATTACCTTACACACCGGT
GCTCTCAGTATTAAAGATGCGGTTGATCTCTCTCGTCATGCGGAAACACTGGATATCTTCGCAACCTCAGCCATCGGCCC
CTGTTTCTTTAAACCGGGTAATCTGGATGACCTAATCGCTTATTGTCAGGCAATAGCCGCGGCAGCACCGTCGAAGGGCT
TCTATTACTACCACTCCGGTATGTCCGGTGTAAATTTGGACATGGAACAGTTTCTGATCAAAGCGGAATCCAAGATCCCT
AACTTGTCAGGAATTAAATTCAATAACGCTGATTTGTATGAGTTTCAACGCTGTTTACGTGTGAGTGGCGGTAAATTTGA
TATTCCGTTTGGCGTTGATGAACATCTGCCAGGTGGATTAGCTGTAGGGGCTATTGGCGCTGTTGGCAGCACTTATAACT
ATGCCGCTCCGCTGTTCCATAAAATTATCGCTGACTTTAATGCGGGTGATCAGGTTGCGGTACAGCGTGGAATGGATCAC
GTTATCGCCCTGATCCGTGTGCTGGTCGAATTCGGTGGTGTTGCCGCCGGTAAGGCCGCGATGCAATTACATGGTATTGA
TGCCGGTAACCCACGTCTGCCACTGCGTGCCTTGACCAAAGAACAGAAGCAAACCGTGGTTAACAGAATGCGTGACGCTA
TTACGTTGCAGTAA

Protein sequence : 
MKKLTGLIAAPHTPFDEQGEVNYPVIDQIAEHLINDGVKGVYVCGTTGEGIHCSVDERKKIAERWVNAAQGKLSITLHTG
ALSIKDAVDLSRHAETLDIFATSAIGPCFFKPGNLDDLIAYCQAIAAAAPSKGFYYYHSGMSGVNLDMEQFLIKAESKIP
NLSGIKFNNADLYEFQRCLRVSGGKFDIPFGVDEHLPGGLAVGAIGAVGSTYNYAAPLFHKIIADFNAGDQVAVQRGMDH
VIALIRVLVEFGGVAAGKAAMQLHGIDAGNPRLPLRALTKEQKQTVVNRMRDAITLQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1776 NP_231411.1 N-acetylneuraminate lyase Not tested VPI-2 Protein 3e-102 76
VC0395_A1374 YP_001217317.1 dihydrodipicolinate synthetase family protein Not tested VPI-2 Protein 3e-102 76
VPI2_0024c ACA01841.1 dihydrodipicolinate synthase/N-acetylneuraminate lyase Not tested VPI-2 Protein 9e-102 76

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPC_1355 YP_005623277.1 putative N-acetylneuraminate lyase VFG1109 Protein 1e-102 76