Gene Information

Name : yopD (YPC_4694)
Accession : YP_005622020.1
Strain :
Genome accession: NC_017263
Putative virulence/resistance : Virulence
Product : putative secreted pore/translocation protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 17551 - 18471 bp
Length : 921 bp
Strand : -
Note : -

DNA sequence : 
ATGACAATAAATATCAAGACAGACAGCCCAATTATCACGACCGGTTCACAGCTTGATGCCATCACTACAGAGACAGTCAA
GCAAAGCGGTGAGATTAAAAAAACAGAAGACACCCGTCATGAAGCACAAGCAATAAAGAGTAGCGAGGCAAGCTTATCTC
GGTCACAGGTGCCAGAATTGATCAAACCGAGCCAGGGAATCAATGTTGCATTACTGAGTAAAAGCCAGGGTGATCTTAAT
GGTACTTTAAGTATCTTGTTGTTGCTGTTGGAACTGGCACGTAAAGCGCGAGAAATGGGTTTGCAACAAAGGGATATAGA
AAATAAAGCTACTATTACTGCCCAAAAGGAGCAGGTAGCGGAGATGGTCAGCGGTGCAAAACTGATGATCGCCATGGCGG
TGGTGTCTGGCATCATGGCTGCTACTTCTACGGTTGCTAGTGCTTTTTCTATAGCGAAAGAGGTGAAAATAGTTAAACAG
GAACAAATTCTAAACAGTAATATTGCTGGCCGCGAACAACTTATTGATACAAAAATGCAGCAAATGAGTAACATTGGTGA
TAAAGCGGTAAGCAGAGAGGATATCGGGAGAATATGGAAACCAGAGCAGGTAGCGGATCAAAATAAGCTGGCATTATTGG
ATAAAGAATTCAGAATGACCGACTCAAAAGCCAATGCGTTTAATGCCGCAACGCAGCCGTTAGGACAAATGGCAAACAGT
GCGATTCAAGTTCATCAAGGGTATTCTCAAGCCGAGGTCAAAGAGAAAGAAGTCAATGCAAGTATTGCTGCCAACGAGAA
GCAAAAAGCCGAAGAGGCGATGAACTATAATGATAACTTTATGAAAGATGTCCTGCGCTTGATTGAACAATATGTTAGCA
GTCATACTCACGCCATGAAAGCCGCTTTTGGTGTTGTCTGA

Protein sequence : 
MTINIKTDSPIITTGSQLDAITTETVKQSGEIKKTEDTRHEAQAIKSSEASLSRSQVPELIKPSQGINVALLSKSQGDLN
GTLSILLLLLELARKAREMGLQQRDIENKATITAQKEQVAEMVSGAKLMIAMAVVSGIMAATSTVASAFSIAKEVKIVKQ
EQILNSNIAGREQLIDTKMQQMSNIGDKAVSREDIGRIWKPEQVADQNKLALLDKEFRMTDSKANAFNAATQPLGQMANS
AIQVHQGYSQAEVKEKEVNASIAANEKQKAEEAMNYNDNFMKDVLRLIEQYVSSHTHAMKAAFGVV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lopD AAO18056.1 LopD Virulence TTSS locus Protein 7e-44 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yopD YP_005622020.1 putative secreted pore/translocation protein VFG0378 Protein 2e-132 100