Gene Information

Name : CWO_00350 (CWO_00350)
Accession : YP_005618692.1
Strain : Buchnera aphidicola LL01
Genome accession: NC_017255
Putative virulence/resistance : Virulence
Product : flagellum-specific ATP synthase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 80377 - 81738 bp
Length : 1362 bp
Strand : +
Note : COG1157 Flagellar biosynthesis/type III secretory pathway ATPase

DNA sequence : 
ATGAATTTAAGATTTGCTCAATTTTTAAAAAATATTTCTTCTTTTGAAAGTAGAATTGAGAAGCTATCTGATATTATTAA
TTATGGTCGTCTTGTTAGTATTAATGGATTAATTTTAGAGGTGGTAGGATTGAACACATCTATTGGTTCAGAATGTTTAA
TTGAAAGAACAATAGATGGTAAAAATGCGAATATTAATGCTGAAGTGATAGGTTTTTCGGGAGAAAAAACTTTTTTATTA
TCTTTTGAAGACATTCATGGTATTTTTCCCGGAGCACGTGTTTTTTCAAAAATAGCTAGCAATAGCAATTTTTTTATAAA
AAAATTGCCATTAGGTATGGAATTACTAGGTAGAGTCTTAGATGGACGAGGTCAACCATTAGATCAATTGCCTAAAATTG
ATCATAAGTATTATTCTACGATAAAAAATTATAGTATTAATCCATTGAATAGAACTCCAATTACTGAAGTATTAGATACT
GGAATACGCGCTATTAATGGACTTTTAACTATTGGAAGAGGTCAAAAAATAGGGATTTTTTCCAGTTCTGGTATTGGTAA
AAGCATTTTACTCGGAATGATAGCACGATATACACAAGCTGACATTATTGTTATTGCTTTAATAGGAGAACGAGGTCGAG
AAGTAAAAGATTTTATAGAAAATATATTAGGTTTAGCAGGGTTATCACGTTCAGTAATTATCGCCGCTCCTGCAGATGTA
TCTCCTTTATTAAAAATAAAAGCAGCATCTTATGCTACTAATATTGCAGAATATTTTTATAAAAATAATAAACATGTATT
GCTTATTATGGATTCATTGACTCGCTATGCTATGGCACAACGAGAAATTTCATTGTCTCTAGGAGAGCTACCTGTCTCTA
AAGGTTATCCATCTTCTATATTTTCAAAAATTCCTAATTTAATAGAAAGAACGGGCATATTTAATAAAAACAAAGGATCT
ATTACTTCATTTTACACAGTTTTAACTGAAGGTGAAGATGAACAAGATCCAGTTTCACATCTTGCTCGTTCTGTATTAGA
TGGACATATTATGTTGTCGCGTTATTATGCTGATTTAGGCCATTATCCTGCTATTGATATTGAATCTTCTATTAGTCGTG
TTATGCCTAACATTATTAATGCTAAACAATATTCTCAAGCTTTTTATTTTAAAAAACTAGTTGCGTCTTATCAAAGAAAT
CGAGATTTAATTAATATAGGGGCTTATGTGAGTGGCACTGATGTAATTTTAGATCATGCGATTAAAATTTGGCCAAAATT
AGAAAAATTCTTACAGCAAGAAATCTCAGAAAAAAGTGATTATCTTTTTTCTTGTGAAGCATTAAATAAAATATTTATTT
AA

Protein sequence : 
MNLRFAQFLKNISSFESRIEKLSDIINYGRLVSINGLILEVVGLNTSIGSECLIERTIDGKNANINAEVIGFSGEKTFLL
SFEDIHGIFPGARVFSKIASNSNFFIKKLPLGMELLGRVLDGRGQPLDQLPKIDHKYYSTIKNYSINPLNRTPITEVLDT
GIRAINGLLTIGRGQKIGIFSSSGIGKSILLGMIARYTQADIIVIALIGERGREVKDFIENILGLAGLSRSVIIAAPADV
SPLLKIKAASYATNIAEYFYKNNKHVLLIMDSLTRYAMAQREISLSLGELPVSKGYPSSIFSKIPNLIERTGIFNKNKGS
ITSFYTVLTEGEDEQDPVSHLARSVLDGHIMLSRYYADLGHYPAIDIESSISRVMPNIINAKQYSQAFYFKKLVASYQRN
RDLINIGAYVSGTDVILDHAIKIWPKLEKFLQQEISEKSDYLFSCEALNKIFI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 2e-57 45
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 3e-57 45
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 2e-57 45
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-57 45
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-57 45
escN AAC38383.1 EscN Virulence LEE Protein 8e-60 45
escN CAI43874.1 EscN protein Virulence LEE Protein 2e-60 45
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 3e-60 45
unnamed AAL06369.1 EscN Virulence LEE Protein 1e-59 45
escN YP_003223475.1 translocator EscN Virulence LEE Protein 3e-60 45
escN AAC31513.1 L0034 Virulence LEE Protein 4e-60 45
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 4e-60 45
escN AAK26715.1 EscN Virulence LEE Protein 2e-60 45
escN YP_003236088.1 translocator EscN Virulence LEE Protein 6e-60 45
escN AAL57542.1 EscN Virulence LEE Protein 2e-60 45
escN NP_290268.1 hypothetical protein Virulence LEE Protein 5e-60 45
escN CAC81862.1 EscN protein Virulence LEE II Protein 2e-60 45
ECs4568 NP_312595.1 EscN Virulence LEE Protein 5e-60 45
lscN AAO18044.1 LscN Virulence TTSS locus Protein 2e-63 44
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-67 44
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-67 44
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 2e-69 44
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 2e-69 44
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-69 44
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 4e-68 43
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 3e-62 43
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 3e-62 43
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 4e-68 42
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 6e-69 42
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 6e-68 42
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 2e-64 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CWO_00350 YP_005618692.1 flagellum-specific ATP synthase VFG2331 Protein 3e-121 57
CWO_00350 YP_005618692.1 flagellum-specific ATP synthase VFG2499 Protein 1e-110 53
CWO_00350 YP_005618692.1 flagellum-specific ATP synthase VFG1254 Protein 2e-100 50
CWO_00350 YP_005618692.1 flagellum-specific ATP synthase VFG0515 Protein 1e-57 45
CWO_00350 YP_005618692.1 flagellum-specific ATP synthase VFG0730 Protein 4e-60 45
CWO_00350 YP_005618692.1 flagellum-specific ATP synthase VFG0812 Protein 2e-60 45
CWO_00350 YP_005618692.1 flagellum-specific ATP synthase VFG0390 Protein 5e-63 43
CWO_00350 YP_005618692.1 flagellum-specific ATP synthase VFG2144 Protein 3e-68 42
CWO_00350 YP_005618692.1 flagellum-specific ATP synthase VFG0192 Protein 2e-66 42
CWO_00350 YP_005618692.1 flagellum-specific ATP synthase VFG0048 Protein 5e-67 42