Gene Information

Name : rhcR (BJ6T_80040)
Accession : YP_005612838.1
Strain : Bradyrhizobium japonicum USDA 6
Genome accession: NC_017249
Putative virulence/resistance : Virulence
Product : RhcR protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 8284811 - 8285476 bp
Length : 666 bp
Strand : -
Note : -

DNA sequence : 
ATGACTGAAATTCAACCCAGCATCCTGGCGCTTCTTGCAATAACGGTCGGCCTTGGTCTCCTGGCCTTTGCTGTCGTCAC
AACTACAGCCTTTATCAAGGTCTCGGTTGTTCTCTTCCTCGTGCGCAATGCGCTAGGAACTCAATCGATACCGCCGAACA
TCGTCCTTTACGGAGCGGCACTCATCCTGACCGTCTTCATCAGCGCTCCAGTCTTCGAGCAGACCTATAACCGCCTTACC
GATCCGCAACTTCGCTACCAGAGTTTCGATGACTGGGTGATGGCCGCCAAGGAGGGACAGGAGCCGCTGCGTGTTCATCT
GAAGAAATTCACCAATGAAGAGCAGCGCCGCTTCTTCCTGTCATCCACCGAACATGTCTGGTCGGAGGAGATGCGCGGCA
GCGTAACGGCAGATGATTTCTCAATTCTTGTGCCGTCGTTCTTGATTTCCGAACTCAAGCGGGGCTTCGAAATCGGTTTT
CTTCTCTATCTTCCCTTCATCACGATCGATCTGATTGTCACCACGATTTTGATGGCCATGGGTATGTCGATGGTATCCCC
CACAGTGATATCTGTCCCCTTCAAGCTCTTTCTGTTCGTCACTATCGACGGCTGGTCACGTCTCATGCACGGGCTAGTAC
TAAGCTACACCACGCCAGGAGGTTGA

Protein sequence : 
MTEIQPSILALLAITVGLGLLAFAVVTTTAFIKVSVVLFLVRNALGTQSIPPNIVLYGAALILTVFISAPVFEQTYNRLT
DPQLRYQSFDDWVMAAKEGQEPLRVHLKKFTNEEQRRFFLSSTEHVWSEEMRGSVTADDFSILVPSFLISELKRGFEIGF
LLYLPFITIDLIVTTILMAMGMSMVSPTVISVPFKLFLFVTIDGWSRLMHGLVLSYTTPGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 8e-43 51
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 7e-37 48
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 1e-41 47
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 7e-42 46
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 3e-43 46
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 1e-40 45
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 1e-40 45
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 1e-40 45
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 3e-43 45
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 3e-43 45
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 6e-43 45
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 6e-43 45
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-43 45
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 1e-42 45
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 4e-35 44
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 4e-35 44
unnamed AAL06354.1 EscR Virulence LEE Protein 1e-33 43
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 5e-35 42
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 2e-33 42
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 2e-33 42
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 2e-35 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 1e-33 42
escR CAI43889.1 EscR protein Virulence LEE Protein 1e-33 42
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 2e-33 42
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 2e-33 42
escR AAK26700.1 EscR Virulence LEE Protein 1e-33 42
escR AAL57527.1 EscR Virulence LEE Protein 1e-33 42
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 1e-38 41
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 3e-33 41
escR AAC38369.1 EscR Virulence LEE Protein 1e-33 41
escR AAC31528.1 L0049 Virulence LEE Protein 2e-33 41
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 2e-33 41
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 1e-32 41
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 3e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
rhcR YP_005612838.1 RhcR protein VFG0188 Protein 2e-43 50
rhcR YP_005612838.1 RhcR protein VFG0044 Protein 3e-44 50
rhcR YP_005612838.1 RhcR protein VFG0394 Protein 1e-40 48
rhcR YP_005612838.1 RhcR protein VFG1012 Protein 3e-35 41
rhcR YP_005612838.1 RhcR protein VFG0715 Protein 7e-34 41
rhcR YP_005612838.1 RhcR protein VFG0827 Protein 9e-34 41