Gene Information

Name : fliI (BJ6T_76490)
Accession : YP_005612483.1
Strain : Bradyrhizobium japonicum USDA 6
Genome accession: NC_017249
Putative virulence/resistance : Virulence
Product : flagellum-specific ATP synthase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 7904409 - 7905734 bp
Length : 1326 bp
Strand : -
Note : -

DNA sequence : 
ATGAAGGCCCTTGCCGAACAGATCGGCGACATCGACGGCGTCAACATCTATGGCCGCGTGGTCGGCGTTCGCGGCCTGAT
GGTCGAGGTGGCCGGACCCATTCACGCGATGTCGGTCGGTGCGCGGCTCGTGATCGAGACCGGCGCGAACCGTTCCATTC
CCTGCGAGGTGATCGGCTTTTCCGACAACAACGCTGTCGTGATGCCGTTCGCCGGCCTGGACGGGGTGCGCCGCGGCTGC
AAGGCCGTCATCGCCAATGCCGCCAATCAAGTGCGTCCGTCATCGGCCTGGCTCGGCCGCGTCGTCAACGCGCTGGGCGA
ACCGATCGACGGCAAGGGGCCGTTGCCGCAGGGCCCTGCGCCGATGCCATACCGCAATTCGCCGCCGCCGGCGCATTCGC
GCAAGCGCGTCGGCGCCCCGCTCGATCTCGGCGTGCGCGCGATGAACACGTTCCTCACCTGCTGCCGCGGCCAGCGCATG
GGCATTTTCGCAGGATCCGGCGTCGGCAAATCGGTGCTGCTGTCGATGCTCGCGCGCAACGTCGATGCCGCGGTCAGCGT
CATCGGGCTGATCGGCGAACGCGGCCGCGAGGTCCAGGAATTCTTGCAGGACGACCTCGGCGAGGAGGGCCTGGCGCGCT
CGGTCGTGGTGGTCGCAACCTCGGACGAGCCGGCGCTGATGCGGCGCCAGGCCGCCTATCTGACGCTCGCGGTGGCCGAA
TATTTCCGCGACGAGGACAAGGACGTGCTCTGCCTGATGGACTCGGTGACGCGCTTTGCCATGGCCCAGCGCGAGATCGG
CCTGTCCGCCGGCGAGCCGCCGACCGCCAAGGGCTATACGCCGACCGTGTTCACCGAGCTGCCGAAGCTTCTGGAGCGCG
CGGGGCCGGGCCTGGGCGAGGGCGCGATCACCGCGATCTTCACGGTGCTGGTCGACGGCGACGACCATAACGAGCCGATC
GCGGATGCCGTCCGCGGCATCCTCGACGGCCATATCGTGATGCAGCGCTCGATCGCCGAGCGCGGCCGTTACCCCGCCAT
CAACATCCTCAAATCCGTCTCCCGCACCATGCCGAAATCGGCCGACCCGCAGTTCTGGCCGACCATCCAGCGGGCCCGCC
AGGTGATGGCGACCTATGCCGACATGGAGGAATTGATCCGGCTCGGGGCCTACCGGGCCGGCTCCAGCCCCGAGGTCGAC
GAGGCGATCCGGCTGCACGAGCCGCTGGAGGCGTTCCTGCGCCAGCGCAAGGACGAAAATGCATCACTGGCGGACGGCTA
CCGCCAGTTGGCGCAAATCCTCGGTGATTTGGAAACGGAACGCTAA

Protein sequence : 
MKALAEQIGDIDGVNIYGRVVGVRGLMVEVAGPIHAMSVGARLVIETGANRSIPCEVIGFSDNNAVVMPFAGLDGVRRGC
KAVIANAANQVRPSSAWLGRVVNALGEPIDGKGPLPQGPAPMPYRNSPPPAHSRKRVGAPLDLGVRAMNTFLTCCRGQRM
GIFAGSGVGKSVLLSMLARNVDAAVSVIGLIGERGREVQEFLQDDLGEEGLARSVVVVATSDEPALMRRQAAYLTLAVAE
YFRDEDKDVLCLMDSVTRFAMAQREIGLSAGEPPTAKGYTPTVFTELPKLLERAGPGLGEGAITAIFTVLVDGDDHNEPI
ADAVRGILDGHIVMQRSIAERGRYPAINILKSVSRTMPKSADPQFWPTIQRARQVMATYADMEELIRLGAYRAGSSPEVD
EAIRLHEPLEAFLRQRKDENASLADGYRQLAQILGDLETER

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscN AAO18044.1 LscN Virulence TTSS locus Protein 1e-84 47
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-79 46
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-79 46
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-80 46
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 4e-80 46
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 4e-80 46
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 1e-71 46
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 1e-71 46
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 1e-70 46
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 1e-70 46
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-71 46
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 4e-72 46
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-79 44
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 8e-79 44
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 9e-80 44
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-78 44
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 2e-71 43
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 2e-71 43
unnamed AAL06369.1 EscN Virulence LEE Protein 4e-71 43
escN YP_003223475.1 translocator EscN Virulence LEE Protein 6e-72 43
escN AAC31513.1 L0034 Virulence LEE Protein 3e-72 43
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 3e-72 43
escN NP_290268.1 hypothetical protein Virulence LEE Protein 4e-72 43
ECs4568 NP_312595.1 EscN Virulence LEE Protein 4e-72 43
escN YP_003236088.1 translocator EscN Virulence LEE Protein 2e-72 43
escN AAC38383.1 EscN Virulence LEE Protein 7e-72 43
escN CAI43874.1 EscN protein Virulence LEE Protein 4e-72 43
escN CAC81862.1 EscN protein Virulence LEE II Protein 4e-72 43
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 6e-72 43
escN AAK26715.1 EscN Virulence LEE Protein 1e-71 43
escN AAL57542.1 EscN Virulence LEE Protein 1e-71 43
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 2e-61 42
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 5e-65 41
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 3e-65 41
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 1e-68 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliI YP_005612483.1 flagellum-specific ATP synthase VFG2499 Protein 4e-79 48
fliI YP_005612483.1 flagellum-specific ATP synthase VFG1254 Protein 4e-82 47
fliI YP_005612483.1 flagellum-specific ATP synthase VFG0390 Protein 4e-84 47
fliI YP_005612483.1 flagellum-specific ATP synthase VFG2144 Protein 1e-88 46
fliI YP_005612483.1 flagellum-specific ATP synthase VFG0515 Protein 7e-72 46
fliI YP_005612483.1 flagellum-specific ATP synthase VFG0048 Protein 7e-86 45
fliI YP_005612483.1 flagellum-specific ATP synthase VFG0192 Protein 2e-82 45
fliI YP_005612483.1 flagellum-specific ATP synthase VFG2331 Protein 1e-79 44
fliI YP_005612483.1 flagellum-specific ATP synthase VFG0812 Protein 2e-72 43
fliI YP_005612483.1 flagellum-specific ATP synthase VFG0730 Protein 4e-72 43