Gene Information

Name : fliP (BJ6T_38900)
Accession : YP_005608752.1
Strain : Bradyrhizobium japonicum USDA 6
Genome accession: NC_017249
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4017565 - 4018254 bp
Length : 690 bp
Strand : -
Note : -

DNA sequence : 
ATGCCTGCGCATGCGCAGGATATCAGCATCAATCTCGGCGGTCAGGGGGGCGGCGGCGTCACCGAGCGCGCGATCCAGCT
CATCGCGCTGCTCACGGTGCTGTCGATCGCGCCGTCGATCCTGATCATGATGACGTCATTCACGCGCATCGTGGTCGTCT
TGTCGCTGCTGCGCACCGCGATGGGCACGGCGACCGCGCCGCCGAACTCGGTGATCATCGCGCTCGCGATGTTCCTCACC
TTCTTCGTGATGGGACCCGTCCTGCAGAAGTCCTACGACGAGGGCATCCGCCCGCTCGTCGCCAACCAGCTTGGCGTCGA
GGACGCACTCCAGCGCGCTTCCGTCCCCTTGCGCGGCTTCATGCAGAAGAACGTGCGCGAGAAGGACCTCAAGCTGTTCC
TGGATCTCTCGGGCGAGCCGCCGCCGGCCACGCCGGATGACCTCGCGCTGCGCATCCTCGTCCCCGCCTTCATGATCTCC
GAGTTGAAGCGCGCCTTCGAGATCGGCTTCCTGCTGTTTCTCCCCTTCCTGATCATCGACCTCGTCGTCGCCTCCGTGCT
GATGTCGATGGGCATGATGATGCTGCCGCCCGCAACGATCTCGCTGCCGTTCAAGCTGATCTTCTTCGTGCTGGTCGATG
GCTGGTCGCTGGTGGCGGGAAGCCTGGTGCAGAGTTACGGAGGCGGATAA

Protein sequence : 
MPAHAQDISINLGGQGGGGVTERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTAMGTATAPPNSVIIALAMFLT
FFVMGPVLQKSYDEGIRPLVANQLGVEDALQRASVPLRGFMQKNVREKDLKLFLDLSGEPPPATPDDLALRILVPAFMIS
ELKRAFEIGFLLFLPFLIIDLVVASVLMSMGMMMLPPATISLPFKLIFFVLVDGWSLVAGSLVQSYGGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 3e-27 48
lscR AAO18040.1 LscR Virulence TTSS locus Protein 7e-26 44
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 2e-26 43
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 3e-26 43
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 3e-26 43
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 9e-26 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 9e-26 42
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 5e-11 41
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 5e-11 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_005608752.1 flagellar biosynthetic protein VFG2338 Protein 3e-49 57
fliP YP_005608752.1 flagellar biosynthetic protein VFG2494 Protein 2e-51 57
fliP YP_005608752.1 flagellar biosynthetic protein VFG1259 Protein 3e-45 52
fliP YP_005608752.1 flagellar biosynthetic protein VFG2016 Protein 6e-41 51
fliP YP_005608752.1 flagellar biosynthetic protein VFG0394 Protein 2e-27 44
fliP YP_005608752.1 flagellar biosynthetic protein VFG0188 Protein 3e-29 44
fliP YP_005608752.1 flagellar biosynthetic protein VFG0519 Protein 1e-26 43
fliP YP_005608752.1 flagellar biosynthetic protein VFG0044 Protein 6e-26 42