Gene Information

Name : cat (Bint_0823)
Accession : YP_005594028.1
Strain : Brachyspira intermedia PWS/A
Genome accession: NC_017243
Putative virulence/resistance : Resistance
Product : chloramphenicol acetyltransferase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 927416 - 928066 bp
Length : 651 bp
Strand : +
Note : -

DNA sequence : 
ATGTTTAATAAAATAGATTTAAATAATTATAATAGAAAAGAACATTATGAAATGTATATGAATAATATTCCATGTACATA
TAGTATAACAGTGCCTTTAAATATCACAAAATTTAAAAAAGCTGTTAAAGATAAGAATATTAAATTTTATGCCTCTGTTA
TTTACTTAATATCAAAAGTTGTAAATAAATACAAAGAATTTAAAATGGTATTGAATGATAATAAAGAACTTGGCTATTAT
GATATTATTAATCCAAGTTATACCATATTTCATAATGATACAAAAACTTTTTCATCTATCCATACAGAATATAATGAAAA
ATTTGATTTGTTTTATAAAAATTATATTTCGGATATGGAAACCTATGGAGAAAATAAAACTTTTTTAGCTAAGCCATGTG
ATATAAAAAATATATTTAATATTTCATCTCTTCCATTATCAACTTTTACTAGCTTTAATCTTAATTTACCAAATAGTTTT
GAGTATTTAGCTCCGATATTTACTATAGGAAAATATTATACAGATGATAAAAACAATATAATAATGCCATTAGCACTACA
AATACATCATAGTGTATGCGATGGATATCATGTAGGTATTTTCTTTGAGGATTTACAGCATGAATTTGATGAATTCGATT
TATTATATTGA

Protein sequence : 
MFNKIDLNNYNRKEHYEMYMNNIPCTYSITVPLNITKFKKAVKDKNIKFYASVIYLISKVVNKYKEFKMVLNDNKELGYY
DIINPSYTIFHNDTKTFSSIHTEYNEKFDLFYKNYISDMETYGENKTFLAKPCDIKNIFNISSLPLSTFTSFNLNLPNSF
EYLAPIFTIGKYYTDDKNNIIMPLALQIHHSVCDGYHVGIFFEDLQHEFDEFDLLY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cat CAJ77070.1 Chloramphenicol acetyltransferase Not tested AbaR1 Protein 3e-43 43
cat YP_006098370.1 chloramphenicol acetyltransferase Not tested Tn2411 Protein 5e-43 43
cat AAL08441.1 chloramphenicol acetyltransferase Not tested SRL Protein 3e-42 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cat YP_005594028.1 chloramphenicol acetyltransferase CP004022.1.gene799.p Protein 2e-43 45
cat YP_005594028.1 chloramphenicol acetyltransferase NC_010111.5787932.p0 Protein 3e-38 44
cat YP_005594028.1 chloramphenicol acetyltransferase CP001581.1.gene2168. Protein 2e-42 44
cat YP_005594028.1 chloramphenicol acetyltransferase NC_010426.6155849.p0 Protein 9e-36 43
cat YP_005594028.1 chloramphenicol acetyltransferase NC_010427.6155852.p0 Protein 9e-36 43
cat YP_005594028.1 chloramphenicol acetyltransferase NC_010410.6002590.p0 Protein 2e-43 43
cat YP_005594028.1 chloramphenicol acetyltransferase NC_011586.7045194.p0 Protein 2e-43 43
cat YP_005594028.1 chloramphenicol acetyltransferase NC_010558.1.6276004. Protein 2e-43 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cat YP_005594028.1 chloramphenicol acetyltransferase VFG1032 Protein 2e-42 42