|
Name : hlyB (Bint_0625) Accession : YP_005593834.1 Strain : Brachyspira intermedia PWS/A Genome accession: NC_017243 Putative virulence/resistance : Virulence Product : hemolysin B ATP-binding subunit Function : - COG functional category : - COG ID : - EC number : - Position : 694966 - 697452 bp Length : 2487 bp Strand : + Note : - DNA sequence : ATGTTTCAATTTCATTTAACAAGTAAGGCAAAAAAGGTAATAGAATTATATGCCCAGGAAGAGGCTAAAAGATTAAATCA TGATATGGTTACTCCTGAACATATACTTTTGGGGCTTCTTCATGAATCAGAAGCTTTGGCTACACGTGTTTTATTGAGAT TGAAAATTGATTTGGACAGACTTAAATTAGAATTAGAATCAGCTATGGTAAAATCTTCAACTACAAAAGTATTTGGAACT TTACCTACTGCTCCTAGAGTACAGAAACTTATAAGCAGATCTGCTGAAGAGGCTAGAGCTTTAAGCCATAATTATATAGG TACTGAACATTTACTTCTTGGACTTTTAAGAGAAGAAAGCGGTACAGCTTATAATGTACTAACAAGTATGGGGCTTGAGC TTACTATATTAAGACAAGAAATATTAAAAATGCTTGGTGTTGCAGGAAGCAATATTTCTTCTATGGAACAGACTACTCAA GAAGATAATGTTAAAAAAGTTAAAACTCCTACTTTAGATCAATTTGCCAGAGATTTAACTAAAATGGCTAGAGATAAGGC TTTAGACAGAGTTATAGGCAGAGAAAATGAAGTTATGAGGGTAGTTCAGATTCTATCAAGAAGAAAGAAAAATAATCCTA TACTTCTTGGAGAGCCTGGGGTAGGTAAAACAGCTATAGTTGAAGGACTTGCTGAAAAGATAGTAGCGGCTGATGTGCCT GATATACTTCTTAAAAAACGCGTATTAACTTTGGATTTATCTTCTGTTGTTGCTGGTACAAAATACAGAGGTGAATTTGA AGAGAGAATAAAAAATATAGTTTTAGAAATAAAAAAAGCTAGTAATATTATTATATTCATAGATGAGCTTCATACATTAA TAGGAGCAGGTGGTGCTGAAGGTGCTTTAGATGCTGCTAATATGTTAAAGCCGGCACTTTCAAGAGGCGAGATTCAATGT ATTGGTGCTACTACTATAAATGAATATAAAAAATACATAGAAAAAGACGGTGCTTTGGTTAGAAGATTTCAGCCTATCAA TGTGGAAGAGCCTAGCATAGAAGATACTATAGAAATATTGAATGGTATAAAAGGTAAATACGAAGAACATCATAAAGTAA AATATACAGATGAAGCTGTAAATGCTGCCGCTGTACTAAGTAAAAGATACATTTTTGAAAGACATTTACCTGATAAAGCT ATAGATTTAATAGATGAGGCAGGTTCAAGAGCAAGACTTCTTAATATGACAAGACCTCAAGAGTTTAAAGATTTAGATAA GAAAATAGAAGAACTTAATCAGCAAAAGAAAAATGCTGTTGATAATCAGAATTTTGAAGATGCTGCTAAAATAAGGGATG AAATTAGTTCTATACAGGAAGAGCTTGCTAAGAAAGAAGAAAAATGGCGTGAAGAAAGAGAAAAGATAGAGACATTCATT GAAGAAGATGATATAAGACATGTTATATCTGAAATAACTAATATACCTATAAAAAGATTATTAAATTCAGAAAGCAAAAG ATTAATAGGTATGGAAGAAGAACTACATCAGAAAGTTGTAGGACAGAAAGAGGCTATATCTTCTATATCTAAGGCTATTA GAAGAAGCAGAGCAGGACTTAAAACATCAAAAAGACCACTTGGTAGTTTTATATTCTTAGGCCCTACTGGTGTTGGTAAA ACAGCTTTAGCTAAAGTGCTTTCAGAGTTTATGTTTGGAGATAGCGATGCTCTTATCAGAATAGATATGAGTGAGTTTAT GGAAAAGTTTGCGGTAAGCAGACTTATAGGAGCTCCTCCAGGATATGTTGGTTATGAAGAGGGAGGTGGACTTACTGAAA AGGTAAGAAGAAAGCCTTATTCTCTTATACTTTTCGATGAGATAGAAAAGGCTCACCCTGATGTTACTAATATACTTTTA CAGGTGCTTGAAGAAGGTCAGCTTACTGATAATTTTGGAAGAAAAGTTGATTTCTCAAATACTATTATAATTATAACAAG TAATTTGGGTGCAAGAGATATTATTAAAGGAAGTTCTTTAGGATTTAATGCTGTTGGAAGCGAAAAAGATGCTAATGATA TTAAAAATTTCGCTTTGGAAGAATTAAAACAGAATTTCAATCCTGAATTTTTAAATAGAATTGATGATATTATAGTGTTC CATACTCTTAGCAAAGAGGATTTAAAAGATATAATCAATATAATGCTTAAAGAGCTTAATGAGGCTATTAAAGAGAGAAA TATCGTTATCAATTTAAGCGAAGAAGCTAAGAATTATATTATTGATAAGGGATTTGATAAGAAGTATGGTGCTAGAAGTT TAAGAAGGGCTATACAGAAAGAGATAGAAGATTATGTGAGTACCGAAATATTGTTTGGTAATATTGAAGATGGTGATACT ATTAACGTTGATGCTAATGATGGCTCTTTGATATTTTCTTATGAGAAGTCTACTAAGACTGAAAATAAGGAATTATCTAA AAGTTAG Protein sequence : MFQFHLTSKAKKVIELYAQEEAKRLNHDMVTPEHILLGLLHESEALATRVLLRLKIDLDRLKLELESAMVKSSTTKVFGT LPTAPRVQKLISRSAEEARALSHNYIGTEHLLLGLLREESGTAYNVLTSMGLELTILRQEILKMLGVAGSNISSMEQTTQ EDNVKKVKTPTLDQFARDLTKMARDKALDRVIGRENEVMRVVQILSRRKKNNPILLGEPGVGKTAIVEGLAEKIVAADVP DILLKKRVLTLDLSSVVAGTKYRGEFEERIKNIVLEIKKASNIIIFIDELHTLIGAGGAEGALDAANMLKPALSRGEIQC IGATTINEYKKYIEKDGALVRRFQPINVEEPSIEDTIEILNGIKGKYEEHHKVKYTDEAVNAAAVLSKRYIFERHLPDKA IDLIDEAGSRARLLNMTRPQEFKDLDKKIEELNQQKKNAVDNQNFEDAAKIRDEISSIQEELAKKEEKWREEREKIETFI EEDDIRHVISEITNIPIKRLLNSESKRLIGMEEELHQKVVGQKEAISSISKAIRRSRAGLKTSKRPLGSFIFLGPTGVGK TALAKVLSEFMFGDSDALIRIDMSEFMEKFAVSRLIGAPPGYVGYEEGGGLTEKVRRKPYSLILFDEIEKAHPDVTNILL QVLEEGQLTDNFGRKVDFSNTIIIITSNLGARDIIKGSSLGFNAVGSEKDANDIKNFALEELKQNFNPEFLNRIDDIIVF HTLSKEDLKDIINIMLKELNEAIKERNIVINLSEEAKNYIIDKGFDKKYGARSLRRAIQKEIEDYVSTEILFGNIEDGDT INVDANDGSLIFSYEKSTKTENKELSKS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 4e-176 | 51 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hlyB | YP_005593834.1 | hemolysin B ATP-binding subunit | VFG0079 | Protein | 0.0 | 54 |
| hlyB | YP_005593834.1 | hemolysin B ATP-binding subunit | VFG0080 | Protein | 4e-138 | 50 |
