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Name : clpB (Bint_1230) Accession : YP_005594429.1 Strain : Brachyspira intermedia PWS/A Genome accession: NC_017243 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease, ATP-binding subunit ClpB Function : - COG functional category : - COG ID : - EC number : - Position : 1383300 - 1385879 bp Length : 2580 bp Strand : - Note : - DNA sequence : ATGGATTATAACAAATATACAATAAAAGCCCAAGAGGCAGTAAATGAAGCTGCTAATATAGCCAATGGTGAAGACCATAA CGAAATAAAAAGCGAACATTTACTTTTAGCATTATTGAAACAAGAGGACGGACTTATTCAGCCTTTAGTAGAAAGAATAG GCGTACCTATAAATACATTGATAGATAAAACTCAAAGATTAGTTGATGAAAACGTAAAGGTTACAGGTGAAAATGTACAG TTACATCTATCTACTAATGCTGGTAAAGTTTTAGCAAAAGCAGAAAAAGAAGCTAATGCTTTGAAAGATCAATATGTATC TACAGAGCATATATTTTTAGCACTTGTTGAAGCTGATAACAAAGCAGGAGACATGCTTAGAAAAAGCGGAATAAGTAAAA AAGAAGTTTTAAGTGCATTAAAAGATTTAAGAAAAGGACAAAGTGTTAATAGCCAAGACCCAGAAGCAAAAATGCAGGCA CTTGATAAATATTGCCGTGATTTGACTTCATTAGCAGAGGCTGAAAAAATTGACCCTGTTATAGGACGTGATGAAGAAAT AAGACGTGTTATGCAGGTATTATCAAGAAGAACAAAAAATAACCCTGTACTCATAGGTGAGCCTGGTGTTGGTAAAACTG CTATTGTTGAAGGACTTGCTAGAAGAATAGTTTCTCAAGATGTACCGGACGGACTTAAAAACAAAAGATTATTAGCTTTG GATTTAGGTGCTTTGGTTGCTGGTGCTAAATTTAGAGGAGAGTTTGAAGAAAGATTAAAAGCTGTTATTACAGAGATAGA AAAATCTGAAGGTAACATAATATTATTTATAGATGAGCTTCATACTCTTGTAGGAGCCGGTGCTACTGAAGGTGCAATGG ATGCTTCTAACCTATTAAAACCTGCATTAGCTAGAGGTGAATTAAGAGCAATAGGTGCAACTACTTTAGATGAATATAGA AAATATATTGAAAAAGATAAAGCACTTGAAAGAAGATTCCAACAGGTTTATTGTAAAGAACCTAGTGTTGAAGATACTAT TTCAATATTAAGAGGTTTGAAAGATAAATACGAAGTTCATCATGGTGTTAGAATAAAAGATGATGCATTAGTTGCTGCTG CTGTTTTATCTAACAGATACATAACTAATAGATTCTTACCTGATAAAGCTATCGACTTGGTAGATGAAGCTGCAAGCCAA TTGAAAATAGAGATAGATAGTCAGCCTACTGAACTTGATAAAATTGAAAGAAAAATTTTACAGCTTAATATAGAAAAACA AGCTCTTTCAAAAGAAAATGATGCTGCTTCTAAAGAAAGATTAGAAAAACTTGAAAAAGAATTATCTGAACTTTCTGAAG AACGTAATGCTATGAAACTTCAATGGGATAATGAAAAAGGAAGAATTGAAGAAACAAGAAAATTAAAAGAAGAACTTGAG GCTTTAAATATAAAAGAAACTCAGTATACAAGAGAAGGAAATTTAGCAAAAGCTGCTGAAATAAAATATGGTAAAATACC AGAACTTCAGAAAAAATTAGAAGAAGCTACTAAGGCTATGGAAGAGGCTAAAAACTCTGATAAGAAAAGGCTTTTAAGAG AAGAAATTTCTGAAGATGATATAGCTAGAGTAATATCTGTATGGACTGGAATACCTGTGAGCAAAATGCTTGCAAGTGAA AAACAAAAATACTTACAGCTTGAAGAAGTATTACATAAGAGAGTTGTAGGACAAGATGAGGCTATAACTTCAGTTGCTGA TGCTATTAGAAGAAACAGAGCAGGACTTTCCGATGAAAATAAACCTCTTGGAAGTTTCTTGTTCATAGGACCTACTGGAG TTGGTAAAACAGAACTTGCTAAAACACTTGCTGATTTCTTATTTAGTGATGAGCATGCTTTAACAAGAATAGATATGAGT GAGTACATGGAGAAATTCTCTGTTACTAGACTTATAGGAGCCCCTCCGGGATATGTAGGTTATGATGAGGGAGGACAATT AACAGAAGCAGTTAGAAGGAGACCTTATTCTGTTATACTATTTGATGAGATAGAAAAAGCTCACCCTGATGTATTTAATG TTTTACTTCAGGTATTAGATGATGGAAGACTTACTGACGGACAAGGAAGAATAGTAGATTTCAAAAATGCTATTATCATA ATGACAAGTAATTTAGGTTCTGATCTTATTCTTGAAGCTAATGATACTAATGATATCAAAGAAAAGATTCAGGAACTATT AAAGATGTCATTTAGACCAGAGTTCTTAAACAGAATAGATGAGATAATAACATTTACTAGACTTGACAAAAAATACATTG CTGAGATAGTAAGAAATCAAATAGCAAGAGTTGCTAACAGACTTAAAGACAGAAGAATAACTTTAGATGTAAGCGATGAA GCTATAGACTATATTGCTGATATTGGTTATGATCCTCAGTTTGGAGCAAGACCATTGAAAAGAGCTATACAAAACTTTAT AGAAAATCCTCTAGCTAAAGAAATGCTAGCAGGCAAATATTTAGAAGGAGATACTATAAAGGTGAAAAAATCAGGAGATG GTTTAGTATTTGAAAAATAA Protein sequence : MDYNKYTIKAQEAVNEAANIANGEDHNEIKSEHLLLALLKQEDGLIQPLVERIGVPINTLIDKTQRLVDENVKVTGENVQ LHLSTNAGKVLAKAEKEANALKDQYVSTEHIFLALVEADNKAGDMLRKSGISKKEVLSALKDLRKGQSVNSQDPEAKMQA LDKYCRDLTSLAEAEKIDPVIGRDEEIRRVMQVLSRRTKNNPVLIGEPGVGKTAIVEGLARRIVSQDVPDGLKNKRLLAL DLGALVAGAKFRGEFEERLKAVITEIEKSEGNIILFIDELHTLVGAGATEGAMDASNLLKPALARGELRAIGATTLDEYR KYIEKDKALERRFQQVYCKEPSVEDTISILRGLKDKYEVHHGVRIKDDALVAAAVLSNRYITNRFLPDKAIDLVDEAASQ LKIEIDSQPTELDKIERKILQLNIEKQALSKENDAASKERLEKLEKELSELSEERNAMKLQWDNEKGRIEETRKLKEELE ALNIKETQYTREGNLAKAAEIKYGKIPELQKKLEEATKAMEEAKNSDKKRLLREEISEDDIARVISVWTGIPVSKMLASE KQKYLQLEEVLHKRVVGQDEAITSVADAIRRNRAGLSDENKPLGSFLFIGPTGVGKTELAKTLADFLFSDEHALTRIDMS EYMEKFSVTRLIGAPPGYVGYDEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRIVDFKNAIII MTSNLGSDLILEANDTNDIKEKIQELLKMSFRPEFLNRIDEIITFTRLDKKYIAEIVRNQIARVANRLKDRRITLDVSDE AIDYIADIGYDPQFGARPLKRAIQNFIENPLAKEMLAGKYLEGDTIKVKKSGDGLVFEK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 1e-99 | 41 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 2e-99 | 41 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 3e-99 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_005594429.1 | ATP-dependent Clp protease, ATP-binding subunit ClpB | VFG2084 | Protein | 2e-106 | 42 |
